Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_0005HA_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000198053-ENSG00000101327	CGP	9606	20:1894167-1994285
Gene	Transcript	Position	Biotype
ENSG00000101327 (PDYN) prodynorphin	ENST00000217305 (PDYN-002)	1978759-1994057	protein_coding
	ENST00000539905 (PDYN-201)	1978757-1994285	protein_coding
	ENST00000540134 (PDYN-202)	1978757-1993748	protein_coding
ENSG00000198053 (SIRPA) signal-regulatory protein alpha	ENST00000356025 (SIRPA-002)	1894783-1939897	protein_coding
	ENST00000358771 (SIRPA-001)	1895296-1939897	protein_coding
	ENST00000400068 (SIRPA-201)	1894167-1939894	protein_coding
	ENST00000622179 (SIRPA-003)	1894508-1940592	protein_coding
ENSG00000233896 (RP4-684O24.5)	ENST00000446562 (RP4-684O24.5-001)	1947246-2007517	antisense
ENSG00000276649 (RP5-858L17.1)	ENST00000615777 (RP5-858L17.1-003)	1890075-1890747	antisense
	ENST00000619200 (RP5-858L17.1-001)	1890221-1894374	antisense
	ENST00000620919 (RP5-858L17.1-002)	1888128-1891202	antisense

CIL_0005HA_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000037902-ENSMUSG00000027400	CGP	10090	2:129592835-129699844
Gene	Transcript	Position	Biotype
ENSMUSG00000027400 (Pdyn) prodynorphin	ENSMUST00000028883 (Pdyn-001)	129686565-129699833	protein_coding
	ENSMUST00000130608 (Pdyn-002)	129688496-129698658	protein_coding
	ENSMUST00000152113 (Pdyn-003)	129697986-129699844	retained_intron
ENSMUSG00000037902 (Sirpa) signal-regulatory protein alpha	ENSMUST00000049262 (Sirpa-009)	129593555-129632228	protein_coding
	ENSMUST00000099113 (Sirpa-201)	129593195-129632220	protein_coding
	ENSMUST00000103202 (Sirpa-006)	129593205-129632228	protein_coding
	ENSMUST00000103203 (Sirpa-001)	129592914-129632228	protein_coding
	ENSMUST00000127751 (Sirpa-004)	129592835-129608992	processed_transcript
	ENSMUST00000136153 (Sirpa-003)	129592839-129608995	processed_transcript
	ENSMUST00000136554 (Sirpa-005)	129592865-129609184	processed_transcript
	ENSMUST00000153491 (Sirpa-002)	129592839-129616257	protein_coding
	ENSMUST00000160276 (Sirpa-007)	129593613-129630184	protein_coding
	ENSMUST00000160952 (Sirpa-011)	129593562-129630589	processed_transcript
	ENSMUST00000161620 (Sirpa-008)	129592839-129632220	protein_coding
	ENSMUST00000162764 (Sirpa-012)	129620685-129628044	retained_intron
	ENSMUST00000163034 (Sirpa-010)	129593568-129630297	protein_coding
	ENSMUST00000179001 (Sirpa-202)	129592839-129632220	protein_coding

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000101327

ENST00000217305

N/A

2.200±1.60

N/A

0.002±0.00

N/A

ENST00000539905

N/A

ENST00000540134

N/A

0.783±0.00

N/A

0.003±0.00

N/A

1.135±0.62

ENSG00000198053

ENST00000356025

10.394±0.00

20.145±0.00

1.208±0.00

31.101±20.16

8.849±6.09

5.709±4.26

1.368±0.69

7.569±4.50

14.667±0.00

0.609±0.00

1.171±0.00

8.180±5.14

12.869±2.46

5.089±3.31

ENST00000358771

N/A

6.528±2.25

2.317±0.00

2.487±0.00

N/A

2.642±0.00

1.091±0.00

N/A

ENST00000400068

N/A

1.326±0.00

N/A

2.470±1.81

N/A

1.433±0.00

1.907±0.00

1.954±0.37

ENST00000622179

N/A

5.572±3.05

1.837±0.00

1.270±0.00

N/A

2.026±0.00

N/A

3.577±0.00

N/A

0.958±0.00

ENSG00000233896

ENST00000446562

0.011±0.00

N/A

0.129±0.00

0.075±0.00

N/A

0.040±0.00

0.039±0.00

0.027±0.00

ENSG00000276649

ENST00000615777

N/A

2.335±0.00

N/A

ENST00000619200

N/A

ENST00000620919

N/A

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000027400

ENSMUST00000028883

0.035±0.00

0.033±0.00

0.007±0.00

3.745±2.83

N/A

0.182±0.08

N/A

0.014±0.00

0.010±0.01

0.021±0.00

N/A

0.032±0.01

0.018±0.00

0.014±0.00

ENSMUST00000130608

N/A

0.377±0.05

N/A

0.033±0.00

N/A

0.559±0.00

N/A

ENSMUST00000152113

N/A

ENSMUSG00000037902

ENSMUST00000049262

6.048±1.06

14.432±5.97

2.549±0.00

10.798±12.20

6.417±1.72

3.644±0.65

2.924±0.75

7.413±1.75

1.393±0.79

9.153±1.92

0.247±0.09

6.996±2.78

0.924±0.38

0.274±0.10

ENSMUST00000099113

4.838±0.00

9.186±0.86

N/A

4.331±0.41

1.810±0.30

N/A

8.412±0.92

0.943±0.00

N/A

0.383±0.04

3.113±0.75

0.192±0.00

0.182±0.00

ENSMUST00000103202

4.616±0.00

N/A

3.154±0.43

4.527±0.78

N/A

2.581±0.61

N/A

0.737±0.00

5.172±1.89

0.817±0.45

0.233±0.03

ENSMUST00000103203

10.884±2.48

8.062±0.00

2.755±0.84

5.473±1.07

13.524±3.80

2.165±0.25

7.272±0.02

20.722±2.21

3.386±2.72

8.959±3.02

0.957±0.57

7.900±4.32

1.437±0.66

0.276±0.00

N/A

N/A

N/A

N/A

N/A

N/A

N/A

N/A

N/A

141.145±0.00

N/A

20.568±0.00

2.503±0.00

1.682±0.00

ENSMUST00000179001

10.867±4.50

15.084±3.69

5.544±0.32

2.116±0.00

13.595±5.46

4.225±0.87

N/A

10.046±2.23

4.823±2.68

16.141±3.88

N/A

9.901±2.76

1.515±0.99

0.398±0.26

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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