C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4A1 pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000448133 EIF4A1P6-001 ENSG00000236608 9606 - 13:60636888-60638097 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLungMuscleTestisENST00000448133
Transcript ID Adipose Breast Colon Kidney Lung Muscle Testis
ENST00000448133 0.033±0.00 0.024±0.00 0.011±0.00 0.012±0.00 0.011±0.00 0.010±0.00 0.022±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KQ CIL_0005KQ_0002 CGP 13:60396457-61415522

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163666 Eif4a1-001 protein_coding Mus_musculus 0 1308
ENSMUST00000122226 Eif4a-ps4-001 processed_pseudogene Mus_musculus 0 1303
ENSMUST00000072982 Gm5513-201 processed_pseudogene Mus_musculus 0 1206
ENSMUST00000120460 Gm12136-001 processed_pseudogene Mus_musculus 0 985
ENSMUST00000118589 Gm15568-001 processed_pseudogene Mus_musculus 0 865
ENSMUST00000128519 Eif4a1-012 retained_intron Mus_musculus 0 830
ENSMUST00000102589 Eif4a1-013 nonsense_mediated_decay Mus_musculus 0 750
ENSMUST00000121818 Gm12920-001 processed_pseudogene Mus_musculus 0 728
ENSMUST00000121086 Gm11258-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000123995 Eif4a1-002 retained_intron Mus_musculus 0 492
ENSMUST00000139299 Eif4a1-006 processed_transcript Mus_musculus 0 405
ENSMUST00000140310 Eif4a1-007 processed_transcript Mus_musculus 0 403
ENSMUST00000142214 Eif4a1-003 processed_transcript Mus_musculus 0 344
ENSMUST00000127677 Eif4a1-008 processed_transcript Mus_musculus 0 307
ENSMUST00000142348 Eif4a1-010 processed_transcript Mus_musculus 0 226
ENSMUST00000133067 Eif4a1-009 processed_transcript Mus_musculus 1e-37 161
ENSMUST00000140186 Eif4a1-011 processed_transcript Mus_musculus 1e-37 161

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