C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00063B_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000172318-ENSG00000198648 CGP 9606 2:167868948-168248141
GeneTranscriptPositionBiotype
ENSG00000172318 (B3GALT1)
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 		ENST00000392690 (B3GALT1-001) 167868948-167874041 protein_coding
ENSG00000198648 (STK39)
serine threonine kinase 39 		ENST00000355999 (STK39-001) 167954020-168248141 protein_coding
ENST00000461000 (STK39-003) 167964308-168012661 processed_transcript
ENST00000487143 (STK39-002) 167954020-168113106 processed_transcript
ENSG00000235335 (AC016723.4)
 ENST00000430546 (AC016723.4-002) 167814774-167869914 antisense
ENST00000436982 (AC016723.4-001) 167815053-167941144 antisense
ENSG00000238259 (AC067940.1)
 ENST00000458411 (AC067940.1-001) 168231921-168232220 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00063B_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034780-ENSMUSG00000027030 CGP 10090 2:67565871-68472268
GeneTranscriptPositionBiotype
ENSMUSG00000027030 (Stk39)
serine/threonine kinase 39 		ENSMUST00000102715 (Stk39-001) 68210445-68472268 protein_coding
ENSMUST00000123781 (Stk39-002) 68262791-68471940 retained_intron
ENSMUST00000126663 (Stk39-008) 68210448-68366519 retained_intron
ENSMUST00000130380 (Stk39-006) 68211740-68223326 processed_transcript
ENSMUST00000134442 (Stk39-004) 68211740-68251351 processed_transcript
ENSMUST00000139407 (Stk39-007) 68211747-68251329 processed_transcript
ENSMUST00000144457 (Stk39-005) 68211740-68251356 processed_transcript
ENSMUST00000149581 (Stk39-003) 68358986-68386681 processed_transcript
ENSMUSG00000034780 (B3galt1)
UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 		ENSMUST00000042456 (B3galt1-001) 68104671-68120514 protein_coding
ENSMUST00000112346 (B3galt1-201) 68117713-68122689 protein_coding
ENSMUST00000180887 (B3galt1-002) 67748212-68118150 protein_coding
ENSMUST00000188614 (B3galt1-003) 67565871-67810894 processed_transcript
ENSMUSG00000081257 (Gm13607)
predicted gene 13607 		ENSMUST00000117875 (Gm13607-001) 68081791-68082329 processed_pseudogene
ENSMUSG00000081899 (Gm13606)
predicted gene 13606 		ENSMUST00000118172 (Gm13606-001) 68135664-68136612 processed_pseudogene
ENSMUSG00000083910 (Gm13604)
predicted gene 13604 		ENSMUST00000119332 (Gm13604-001) 67707290-67707771 processed_pseudogene
ENSMUSG00000097067 (Gm26743)
predicted gene, 26743 		ENSMUST00000180913 (Gm26743-001) 67677031-67687282 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00063B_0001ENSG00000172318ENST00000392690ENSG00000198648ENST00000355999ENST00000461000ENST00000487143ENSG00000235335ENST00000430546ENST00000436982ENSG00000238259ENST00000458411CIL_00063B_0002ENSMUSG00000027030ENSMUST00000102715ENSMUST00000123781ENSMUST00000126663ENSMUST00000130380ENSMUST00000134442ENSMUST00000139407ENSMUST00000144457ENSMUST00000149581ENSMUSG00000034780ENSMUST00000042456ENSMUST00000112346ENSMUST00000180887ENSMUST00000188614ENSMUSG00000081257ENSMUST00000117875ENSMUSG00000081899ENSMUST00000118172ENSMUSG00000083910ENSMUST00000119332ENSMUSG00000097067ENSMUST00000180913
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00063B_0001ENSG00000172318ENST00000392690ENSG00000198648ENST00000355999ENST00000487143ENSG00000235335ENST00000430546ENSG00000238259ENST00000458411CIL_00063B_0002ENSMUSG00000027030ENSMUST00000102715ENSMUST00000123781ENSMUSG00000034780ENSMUST00000042456ENSMUST00000112346ENSMUST00000180887ENSMUST00000188614ENSMUSG00000081257ENSMUST00000117875ENSMUSG00000081899ENSMUST00000118172ENSMUSG00000083910ENSMUST00000119332ENSMUSG00000097067ENSMUST00000180913
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000172318 ENST00000392690 0.161±0.00 N/A N/A 0.622±0.10 0.357±0.00 N/A N/A 0.026±0.00 0.005±0.00 0.057±0.02 0.988±0.00 0.279±0.00 0.014±0.00 N/A
ENSG00000198648 ENST00000355999 10.210±0.00 3.197±0.00 1.219±0.00 11.770±9.82 5.365±2.42 7.734±2.39 4.256±0.83 3.239±3.01 2.626±2.48 3.136±0.29 0.421±0.00 6.546±2.85 0.747±0.15 19.418±5.44
ENST00000461000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.133±0.00 N/A N/A N/A
ENSG00000235335 ENST00000430546 N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A 0.073±0.03 N/A
ENST00000436982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000238259 ENST00000458411 N/A 0.054±0.00 N/A 0.207±0.00 N/A 1.084±0.00 N/A 0.321±0.00 N/A 0.159±0.00 N/A 1.975±1.86 N/A 0.226±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027030 ENSMUST00000102715 3.204±0.59 12.348±1.53 11.609±0.24 9.496±1.07 3.931±1.90 9.218±0.76 6.111±1.63 4.321±1.71 0.664±0.30 2.379±0.94 0.497±0.13 12.570±1.90 7.913±2.23 43.541±14.95
ENSMUST00000123781 N/A 19.132±10.18 N/A 4.616±0.00 N/A 3.500±0.93 N/A N/A N/A N/A N/A 15.025±4.95 4.378±2.36 109.751±0.00
ENSMUST00000126663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034780 ENSMUST00000042456 N/A N/A N/A 0.797±0.00 0.189±0.00 N/A 0.166±0.06 0.048±0.01 N/A N/A N/A 0.048±0.00 0.014±0.00 0.094±0.06
ENSMUST00000112346 1.071±0.38 0.487±0.12 0.277±0.06 6.993±1.90 0.734±0.07 0.227±0.07 0.229±0.04 0.162±0.07 1.154±1.09 0.331±0.03 0.271±0.16 0.232±0.17 0.044±0.03 0.107±0.06
ENSMUST00000180887 N/A N/A N/A 6.604±0.00 N/A N/A N/A N/A N/A 0.600±0.00 N/A 0.145±0.00 0.073±0.00 0.136±0.00
ENSMUST00000188614 N/A 2.772±0.00 N/A N/A N/A 0.246±0.08 N/A 0.280±0.10 N/A N/A N/A 0.779±0.25 0.194±0.00 N/A
ENSMUSG00000081257 ENSMUST00000117875 N/A N/A 0.018±0.00 0.120±0.01 0.293±0.00 N/A N/A 0.082±0.00 0.171±0.04 N/A N/A N/A 0.012±0.00 N/A
ENSMUSG00000081899 ENSMUST00000118172 0.058±0.02 0.110±0.00 0.047±0.00 0.051±0.01 0.086±0.03 N/A 0.038±0.00 0.070±0.04 0.046±0.03 0.049±0.00 N/A 0.096±0.05 0.267±0.00 N/A
ENSMUSG00000083910 ENSMUST00000119332 0.171±0.04 0.302±0.00 0.056±0.03 0.173±0.00 0.161±0.00 N/A N/A 0.107±0.00 0.149±0.13 0.144±0.00 0.278±0.17 0.244±0.08 0.173±0.09 0.268±0.00
ENSMUSG00000097067 ENSMUST00000180913 N/A N/A 0.020±0.01 N/A N/A N/A 0.021±0.00 N/A 0.004±0.00 N/A 0.019±0.00 0.205±0.00 0.017±0.01 N/A

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