C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 8 (sodium/calcium exchanger), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000494208 SLC8A3-002 ENSG00000100678 9606 - 14:70044217-70189070 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLungMuscleOvaryPlacentaENST00000494208
Transcript ID Adipose Brain Colon Heart Kidney Lung Muscle Ovary Placenta
ENST00000494208 0.077±0.00 0.798±0.00 0.025±0.01 0.020±0.00 0.006±0.00 0.253±0.00 1.695±1.13 0.013±0.00 0.022±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M6 CIL_0002M6_0001 CGP 14:69854131-70189070
CIL_0006J1 CIL_0006J1_0002 CGP 14:70044217-70359731

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005432 IEA calcium:sodium antiporter activity
GO:0005516 IEA calmodulin binding
GO:0005886 TAS plasma membrane
GO:0006811 TAS ion transport
GO:0006816 IEA calcium ion transport
GO:0007154 IEA cell communication
GO:0007596 TAS blood coagulation
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0035725 IEA sodium ion transmembrane transport
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183102 Slc8a3-003 retained_intron Mus_musculus 0 2702
ENSMUST00000182208 Slc8a3-002 protein_coding Mus_musculus 0 2702
ENSMUST00000064594 Slc8a3-004 protein_coding Mus_musculus 0 2702
ENSMUST00000085238 Slc8a3-001 protein_coding Mus_musculus 0 2702
ENSMUST00000182366 Slc8a3-005 protein_coding Mus_musculus 0 521
ENSDART00000000804 slc8a1b-201 protein_coding Danio_rerio 0 455
ENSDART00000089919 slc8a1b-202 protein_coding Danio_rerio 0 455
ENSDART00000128875 slc8a1b-002 protein_coding Danio_rerio 0 455
ENSDART00000151929 slc8a1b-001 protein_coding Danio_rerio 0 455
ENSDART00000046800 slc8a1a-201 protein_coding Danio_rerio 0 387
ENSDART00000089803 slc8a1a-001 protein_coding Danio_rerio 0 387

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