C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486977 RP11-25I15.1-001 ENSG00000240759 9606 - 12:42678873-42679124 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartLiverLungMuscleOvaryPlacentaTestisENST00000486977
Transcript ID Adipose Adrenal Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000486977 0.124±0.00 0.066±0.00 0.068±0.00 0.232±0.00 0.057±0.00 0.480±0.00 0.168±0.00 0.390±0.00 0.303±0.00 0.269±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006R4 CIL_0006R4_0001 CGP 12:42456754-43551921

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053150 Rps27rt-001 protein_coding Mus_musculus 0 394
ENSMUST00000170122 Rps27-201 protein_coding Mus_musculus 0 394
ENSMUST00000118062 Gm15531-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000173599 Gm19246-001 processed_pseudogene Mus_musculus 0 333
ENSMUST00000118179 Rps27-ps1-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000121307 Gm13009-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000119835 Gm14175-001 unprocessed_pseudogene Mus_musculus 0 289
ENSMUST00000119164 Gm11572-001 processed_pseudogene Mus_musculus 9.99967e-42 172

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