C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 14231
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120090 Gm14231-001 ENSMUSG00000082196 10090 - 2:156789812-156790403 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverMuscleOvaryPlacentaENSMUST00000120090
Transcript ID Bladder Brain Kidney Liver Muscle Ovary Placenta
ENSMUST00000120090 0.052±0.00 0.035±0.02 0.078±0.00 0.035±0.02 0.079±0.00 0.207±0.05 0.181±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RT CIL_0006RT_0003 CGP 2:156775420-156855570

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295955 RPL9-001 protein_coding Homo_sapiens 0 643
ENST00000330965 RPL9P7-001 processed_pseudogene Homo_sapiens 0 643
ENST00000393394 RPL9-201 protein_coding Homo_sapiens 0 649
ENST00000418824 UBE2Q2P6-002 processed_transcript Homo_sapiens 0 427
ENST00000420684 AC009500.2-001 processed_pseudogene Homo_sapiens 0 291
ENST00000423843 AC093698.1-001 processed_pseudogene Homo_sapiens 0 477
ENST00000424673 RPL9P2-001 processed_pseudogene Homo_sapiens 0 385
ENST00000437992 RPL9-010 retained_intron Homo_sapiens 0 388
ENST00000449470 RPL9-002 protein_coding Homo_sapiens 0 643
ENST00000461606 RPL9P28-001 processed_pseudogene Homo_sapiens 0 544
ENST00000463864 CTD-2290C23.1-001 processed_pseudogene Homo_sapiens 0 560
ENST00000464118 RPL9P32-001 processed_pseudogene Homo_sapiens 0 540
ENST00000466501 UBE2Q2P6-001 transcribed_processed_pseudogene Homo_sapiens 0 649
ENST00000472460 RP11-851M3.1-001 processed_pseudogene Homo_sapiens 0 416
ENST00000474761 CTD-2377D24.2-001 processed_pseudogene Homo_sapiens 3e-20 100
ENST00000489027 RP11-64K12.1-001 processed_pseudogene Homo_sapiens 0 483
ENST00000491923 RPL9P16-001 processed_pseudogene Homo_sapiens 0 424
ENST00000495117 RPL9P31-001 processed_pseudogene Homo_sapiens 0 361
ENST00000503040 RPL9-011 protein_coding Homo_sapiens 0 540
ENST00000503277 RPL9-008 retained_intron Homo_sapiens 0 608
ENST00000504470 RPL9-009 protein_coding Homo_sapiens 0 568
ENST00000506581 RPL9-012 protein_coding Homo_sapiens 0 226
ENST00000508595 RPL9-007 protein_coding Homo_sapiens 0 608
ENST00000511075 RPL9-006 retained_intron Homo_sapiens 0 424
ENST00000511084 CTB-85P21.1-001 processed_pseudogene Homo_sapiens 4.06377e-44 182
ENST00000511643 RPL9-013 retained_intron Homo_sapiens 0 228
ENST00000514842 RPL9-005 retained_intron Homo_sapiens 0 366

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