C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006S2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000030650-ENSDARG00000021494 CGP 7955 23:26108394-26153195
GeneTranscriptPositionBiotype
ENSDARG00000021494 (hnf4a)
hepatocyte nuclear factor 4, alpha 		ENSDART00000028236 (hnf4a-201) 26143980-26153189 protein_coding
ENSDART00000124103 (hnf4a-002) 26143968-26151305 nonsense_mediated_decay
ENSDART00000138272 (hnf4a-004) 26148737-26149636 processed_transcript
ENSDART00000138907 (hnf4a-005) 26120028-26148867 protein_coding
ENSDART00000139049 (hnf4a-003) 26144009-26144622 retained_intron
ENSDART00000145426 (hnf4a-001) 26143880-26153195 protein_coding
ENSDARG00000030650 (r3hdml)
R3H domain containing-like 		ENSDART00000039705 (r3hdml-201) 26110081-26114332 protein_coding
ENSDART00000138305 (r3hdml-001) 26108394-26114709 protein_coding
CIL_0006S2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101074-ENSG00000101076 CGP 9606 20:44336986-44432845
GeneTranscriptPositionBiotype
ENSG00000101074 (R3HDML)
R3H domain containing-like 		ENST00000217043 (R3HDML-001) 44336986-44351235 protein_coding
ENSG00000101076 (HNF4A)
hepatocyte nuclear factor 4, alpha 		ENST00000316099 (HNF4A-002) 44401284-44432845 protein_coding
ENST00000316673 (HNF4A-001) 44355700-44429671 protein_coding
ENST00000372920 (HNF4A-003) 44401270-44431386 nonsense_mediated_decay
ENST00000415691 (HNF4A-006) 44401301-44430500 protein_coding
ENST00000443598 (HNF4A-004) 44401284-44424639 protein_coding
ENST00000457232 (HNF4A-005) 44355801-44429671 protein_coding
ENST00000609262 (HNF4A-008) 44355805-44407474 protein_coding
ENST00000609795 (HNF4A-007) 44355801-44424379 protein_coding
ENST00000619550 (HNF4A-201) 44355801-44432843 protein_coding
ENSG00000201363 (Y_RNA)
Y RNA 		ENST00000364493 (Y_RNA.1-447) 44344839-44344933 misc_RNA
ENSG00000226812 (RP5-881L22.5)
 ENST00000430481 (RP5-881L22.5-002) 44350707-44352102 antisense
ENST00000438702 (RP5-881L22.5-001) 44347552-44355185 antisense
ENSG00000229005 (HNF4A-AS1)
HNF4A antisense RNA 1 		ENST00000452481 (HNF4A-AS1-001) 44377743-44395706 antisense
ENST00000609152 (HNF4A-AS1-002) 44372746-44384671 antisense
ENSG00000233376 (RP5-881L22.6)
 ENST00000455642 (RP5-881L22.6-001) 44389624-44391537 antisense
ENSG00000265893 (AL132772.1)
 ENST00000581483 (AL132772.1-201) 44425052-44425141 miRNA
CIL_0006S2_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000078949-ENSMUSG00000017950 CGP 10090 2:163492318-163572910
GeneTranscriptPositionBiotype
ENSMUSG00000017950 (Hnf4a)
hepatic nuclear factor 4, alpha 		ENSMUST00000018094 (Hnf4a-201) 163547188-163572905 protein_coding
ENSMUST00000109411 (Hnf4a-001) 163547187-163572910 protein_coding
ENSMUST00000131658 (Hnf4a-003) 163546817-163559110 processed_transcript
ENSMUST00000137449 (Hnf4a-004) 163550083-163559109 protein_coding
ENSMUST00000143911 (Hnf4a-002) 163506808-163552635 protein_coding
ENSMUSG00000046840 (Hnf4aos)
hepatic nuclear factor 4 alpha, opposite strand 		ENSMUST00000125811 (Hnf4aos-001) 163494194-163541692 antisense
ENSMUST00000128896 (Hnf4aos-003) 163493807-163541720 antisense
ENSMUST00000141329 (Hnf4aos-002) 163493807-163541720 antisense
ENSMUSG00000078949 (R3hdml)
R3H domain containing-like 		ENSMUST00000109416 (R3hdml-001) 163492318-163502612 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006S2_0001ENSDARG00000021494ENSDART00000028236ENSDART00000124103ENSDART00000138272ENSDART00000138907ENSDART00000139049ENSDART00000145426ENSDARG00000030650ENSDART00000039705ENSDART00000138305CIL_0006S2_0002ENSG00000101074ENST00000217043ENSG00000101076ENST00000316099ENST00000316673ENST00000372920ENST00000415691ENST00000443598ENST00000457232ENST00000609262ENST00000609795ENST00000619550ENSG00000201363ENST00000364493ENSG00000226812ENST00000430481ENST00000438702ENSG00000229005ENST00000452481ENST00000609152ENSG00000233376ENST00000455642ENSG00000265893ENST00000581483CIL_0006S2_0003ENSMUSG00000017950ENSMUST00000018094ENSMUST00000109411ENSMUST00000131658ENSMUST00000137449ENSMUST00000143911ENSMUSG00000046840ENSMUST00000125811ENSMUST00000128896ENSMUST00000141329ENSMUSG00000078949ENSMUST00000109416
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006S2_0001ENSDARG00000021494ENSDART00000028236ENSDART00000124103ENSDART00000138272ENSDART00000138907ENSDART00000139049ENSDART00000145426ENSDARG00000030650ENSDART00000039705ENSDART00000138305CIL_0006S2_0002ENSG00000101074ENST00000217043ENSG00000101076ENST00000316099ENST00000372920ENST00000415691ENST00000443598ENST00000457232ENST00000609795ENST00000619550ENSG00000201363ENST00000364493ENSG00000226812ENST00000430481ENST00000438702ENSG00000229005ENST00000452481ENST00000609152ENSG00000233376ENST00000455642ENSG00000265893ENST00000581483CIL_0006S2_0003ENSMUSG00000017950ENSMUST00000018094ENSMUST00000109411ENSMUST00000143911ENSMUSG00000046840ENSMUST00000125811ENSMUST00000128896ENSMUST00000141329ENSMUSG00000078949ENSMUST00000109416
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000021494 ENSDART00000028236 N/A N/A N/A 0.041±0.01 N/A N/A 0.532±0.15 19.084±8.64 9.719±0.00 N/A 0.242±0.00 N/A N/A N/A
ENSDART00000124103 N/A N/A N/A N/A N/A N/A N/A 4.489±0.00 5.460±0.00 N/A N/A N/A N/A N/A
ENSDART00000138272 N/A N/A N/A 0.324±0.20 N/A N/A 0.659±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138907 N/A N/A N/A 0.186±0.00 N/A N/A 0.060±0.00 N/A N/A N/A 0.785±0.00 N/A N/A N/A
ENSDART00000139049 N/A N/A N/A 1.266±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000145426 N/A N/A N/A 0.414±0.00 N/A N/A 0.361±0.00 N/A 2.635±0.00 N/A 0.811±0.00 N/A N/A N/A
ENSDARG00000030650 ENSDART00000039705 N/A N/A N/A 0.352±0.12 N/A N/A 0.170±0.03 0.355±0.00 0.061±0.00 N/A N/A N/A N/A N/A
ENSDART00000138305 N/A N/A N/A 0.100±0.00 N/A N/A 0.733±0.34 0.758±0.24 N/A N/A 0.660±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101074 ENST00000217043 N/A N/A N/A 0.018±0.00 N/A 0.117±0.00 0.043±0.00 N/A N/A N/A N/A N/A N/A 0.286±0.00
ENSG00000101076 ENST00000316099 N/A N/A 2.451±0.00 N/A N/A 0.475±0.00 N/A 15.863±0.00 4.957±0.00 0.002±0.00 N/A N/A 0.013±0.00 N/A
ENST00000316673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372920 N/A N/A 1.992±0.00 0.061±0.00 N/A 3.853±0.00 N/A 5.953±0.00 N/A 0.019±0.00 N/A 0.852±0.73 0.015±0.00 0.608±0.38
ENST00000415691 N/A N/A 3.221±0.00 N/A N/A 4.706±0.00 N/A 9.363±0.00 N/A N/A N/A N/A 0.013±0.00 0.402±0.00
ENST00000443598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.249±0.00
ENST00000457232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.421±0.00 N/A N/A N/A
ENST00000609262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609795 N/A N/A N/A N/A N/A N/A 0.021±0.00 N/A N/A N/A 0.040±0.00 N/A 0.048±0.00 N/A
ENST00000619550 N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.213±0.05
ENSG00000201363 ENST00000364493 N/A N/A N/A N/A N/A 0.372±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226812 ENST00000430481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.385±0.00
ENST00000438702 N/A N/A N/A N/A N/A 0.352±0.00 0.034±0.00 0.131±0.00 0.236±0.00 N/A N/A 1.776±0.98 N/A 0.210±0.00
ENSG00000229005 ENST00000452481 N/A 0.179±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000609152 N/A N/A N/A N/A N/A 0.128±0.00 N/A 1.700±0.00 3.803±0.00 N/A N/A 0.116±0.00 N/A 0.111±0.00
ENSG00000233376 ENST00000455642 N/A N/A 0.316±0.00 N/A N/A 3.421±0.00 N/A N/A 0.313±0.00 N/A N/A 2.881±1.56 N/A N/A
ENSG00000265893 ENST00000581483 1.099±0.00 0.376±0.00 N/A N/A 0.391±0.00 N/A 0.361±0.00 1.156±0.00 3.466±0.00 N/A N/A 4.465±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017950 ENSMUST00000018094 0.014±0.01 0.055±0.02 N/A 0.004±0.00 0.155±0.17 153.134±21.16 0.017±0.00 148.276±12.61 75.813±58.43 0.108±0.05 0.010±0.00 0.142±0.04 18.480±11.50 0.021±0.00
ENSMUST00000109411 0.014±0.01 0.024±0.01 N/A 0.003±0.00 0.081±0.07 N/A 0.017±0.00 N/A 11.242±7.50 0.098±0.04 0.010±0.00 0.101±0.04 2.889±2.54 0.020±0.00
ENSMUST00000131658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143911 0.104±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.289±0.00 N/A 0.778±0.08 N/A N/A
ENSMUSG00000046840 ENSMUST00000125811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.218±0.00 N/A
ENSMUST00000128896 N/A N/A N/A N/A N/A N/A N/A 2.643±0.01 N/A N/A N/A 0.249±0.14 N/A N/A
ENSMUST00000141329 N/A N/A N/A N/A N/A 0.126±0.00 N/A 13.030±1.79 4.236±4.01 N/A N/A 0.205±0.11 0.374±0.12 0.069±0.00
ENSMUSG00000078949 ENSMUST00000109416 N/A N/A N/A 0.026±0.01 4.231±1.23 0.509±0.17 N/A 1.360±0.48 0.013±0.00 0.026±0.00 0.033±0.00 0.611±0.26 0.065±0.03 N/A

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