Notice (8): Undefined index: CIL_0007N0_0004 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007N0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007N0_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000114405' => 'chromosome 3 open reading frame 14',
'ENSG00000144724' => 'protein tyrosine phosphatase, receptor type, G',
'ENSG00000153266' => 'FEZ family zinc finger 2',
'ENSG00000163618' => 'Ca++-dependent secretion activator',
'ENSG00000241472' => 'PTPRG antisense RNA 1',
'ENSMUSG00000021743' => 'Fez family zinc finger 2',
'ENSMUSG00000021745' => 'protein tyrosine phosphatase, receptor type, G',
'ENSMUSG00000033111' => 'RIKEN cDNA 3830406C13 gene',
'ENSMUSG00000054423' => 'Ca2+-dependent secretion activator',
'ENSMUSG00000077158' => 'predicted gene, 24578'
),
'gene_name_arr' => array(
'ENSG00000114405' => 'C3orf14',
'ENSG00000144724' => 'PTPRG',
'ENSG00000153266' => 'FEZF2',
'ENSG00000163618' => 'CADPS',
'ENSG00000241472' => 'PTPRG-AS1',
'ENSMUSG00000021743' => 'Fezf2',
'ENSMUSG00000021745' => 'Ptprg',
'ENSMUSG00000033111' => '3830406C13Rik',
'ENSMUSG00000054423' => 'Cadps',
'ENSMUSG00000077158' => 'Gm24578'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 37 => 'Brain',
(int) 54 => 'Breast',
(int) 76 => 'Colon',
(int) 92 => 'Heart',
(int) 108 => 'Kidney',
(int) 127 => 'Liver',
(int) 146 => 'Lung',
(int) 165 => 'Muscle',
(int) 178 => 'Ovary',
(int) 200 => 'Placenta',
(int) 224 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 63,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000232519' => array(
'start' => '62319022',
'end' => '62333646',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-006'
),
'ENST00000462069' => array(
'start' => '62318973',
'end' => '62333426',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-004'
),
'ENST00000465142' => array(
'start' => '62319032',
'end' => '62331335',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-005'
),
'ENST00000486169' => array(
'start' => '62319015',
'end' => '62324133',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'C3orf14-003'
),
'ENST00000491323' => array(
'start' => '62319072',
'end' => '62322519',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'C3orf14-002'
),
'ENST00000494481' => array(
'start' => '62319043',
'end' => '62336213',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-001'
),
'ENST00000542214' => array(
'start' => '62319721',
'end' => '62333646',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-201'
),
'ENST00000295874' => array(
'start' => '61561911',
'end' => '62293329',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-002'
),
'ENST00000468576' => array(
'start' => '62243805',
'end' => '62263465',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PTPRG-008'
),
'ENST00000474889' => array(
'start' => '61561911',
'end' => '62297613',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-001'
),
'ENST00000475012' => array(
'start' => '62217583',
'end' => '62293551',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-005'
),
'ENST00000475527' => array(
'start' => '61561851',
'end' => '61751049',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-003'
),
'ENST00000485215' => array(
'start' => '62243576',
'end' => '62267813',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-007'
),
'ENST00000495879' => array(
'start' => '61561569',
'end' => '61771395',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-006'
),
'ENST00000615556' => array(
'start' => '61989621',
'end' => '62294898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-201'
),
'ENST00000618938' => array(
'start' => '61989621',
'end' => '62294898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-202'
),
'ENST00000283268' => array(
'start' => '62369684',
'end' => '62373515',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FEZF2-001'
),
'ENST00000475839' => array(
'start' => '62369692',
'end' => '62373015',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FEZF2-002'
),
'ENST00000486811' => array(
'start' => '62369681',
'end' => '62374324',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FEZF2-004'
),
'ENST00000283269' => array(
'start' => '62398972',
'end' => '62875241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-001'
),
'ENST00000357948' => array(
'start' => '62398350',
'end' => '62875338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-006'
),
'ENST00000383710' => array(
'start' => '62398347',
'end' => '62875379',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-013'
),
'ENST00000462768' => array(
'start' => '62465367',
'end' => '62470754',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADPS-009'
),
'ENST00000463002' => array(
'start' => '62478006',
'end' => '62492346',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-011'
),
'ENST00000466621' => array(
'start' => '62403094',
'end' => '62478323',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-018'
),
'ENST00000468271' => array(
'start' => '62516114',
'end' => '62536581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-008'
),
'ENST00000469292' => array(
'start' => '62465367',
'end' => '62466681',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-014'
),
'ENST00000473635' => array(
'start' => '62398348',
'end' => '62481855',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-015'
),
'ENST00000474560' => array(
'start' => '62398352',
'end' => '62441135',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-004'
),
'ENST00000478408' => array(
'start' => '62473708',
'end' => '62478316',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-010'
),
'ENST00000478434' => array(
'start' => '62532919',
'end' => '62550889',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-007'
),
'ENST00000478570' => array(
'start' => '62474173',
'end' => '62500606',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-003'
),
'ENST00000486172' => array(
'start' => '62398348',
'end' => '62404875',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-005'
),
'ENST00000490353' => array(
'start' => '62625230',
'end' => '62875029',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-002'
),
'ENST00000490424' => array(
'start' => '62536016',
'end' => '62550114',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-012'
),
'ENST00000491424' => array(
'start' => '62491339',
'end' => '62536466',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-016'
),
'ENST00000542833' => array(
'start' => '62533022',
'end' => '62585246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-017'
),
'ENST00000612439' => array(
'start' => '62398346',
'end' => '62875389',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-201'
),
'ENST00000613879' => array(
'start' => '62398355',
'end' => '62474325',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-202'
),
'ENST00000462497' => array(
'start' => '62261825',
'end' => '62318923',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-002'
),
'ENST00000466893' => array(
'start' => '62276427',
'end' => '62318892',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-005'
),
'ENST00000469148' => array(
'start' => '62260865',
'end' => '62262740',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-010'
),
'ENST00000474795' => array(
'start' => '62261823',
'end' => '62318947',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-001'
),
'ENST00000475371' => array(
'start' => '62263875',
'end' => '62318892',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-003'
),
'ENST00000479018' => array(
'start' => '62263929',
'end' => '62318935',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-009'
),
'ENST00000479588' => array(
'start' => '62294273',
'end' => '62318632',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PTPRG-AS1-006'
),
'ENST00000490916' => array(
'start' => '62276775',
'end' => '62369326',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-008'
),
'ENST00000495542' => array(
'start' => '62264042',
'end' => '62369330',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-007'
),
'ENST00000498655' => array(
'start' => '62292634',
'end' => '62318778',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-004'
),
'ENSMUST00000022262' => array(
'start' => '12341892',
'end' => '12345865',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fezf2-201'
),
'ENSMUST00000022264' => array(
'start' => '11553532',
'end' => '12242041',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ptprg-001'
),
'ENSMUST00000119888' => array(
'start' => '12189943',
'end' => '12238563',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ptprg-004'
),
'ENSMUST00000134290' => array(
'start' => '12218946',
'end' => '12223556',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ptprg-005'
),
'ENSMUST00000142917' => array(
'start' => '11553553',
'end' => '12238564',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Ptprg-002'
),
'ENSMUST00000148113' => array(
'start' => '11553581',
'end' => '11964131',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ptprg-003'
),
'ENSMUST00000155727' => array(
'start' => '12091160',
'end' => '12122132',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ptprg-006'
),
'ENSMUST00000112669' => array(
'start' => '12284209',
'end' => '12303231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '3830406C13Rik-201'
),
'ENSMUST00000163392' => array(
'start' => '12284209',
'end' => '12303231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '3830406C13Rik-202'
),
'ENSMUST00000067491' => array(
'start' => '12372563',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-201'
),
'ENSMUST00000112657' => array(
'start' => '12372565',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-202'
),
'ENSMUST00000112658' => array(
'start' => '12372565',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-203'
),
'ENSMUST00000177814' => array(
'start' => '12372565',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-204'
),
'ENSMUST00000103970' => array(
'start' => '12333776',
'end' => '12333904',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24578-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007N0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007N0_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007N0_0001' => array(
'genes_in_region' => array(
'ENSG00000114405' => array(
[maximum depth reached]
),
'ENSG00000144724' => array(
[maximum depth reached]
),
'ENSG00000153266' => array(
[maximum depth reached]
),
'ENSG00000163618' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Kidney',
(int) 6 => 'Ovary',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Adrenal',
(int) 10 => 'Breast',
(int) 11 => 'Colon',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Heart',
(int) 20 => 'Liver',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Kidney',
(int) 38 => 'Liver',
(int) 39 => 'Lung',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adrenal',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Testis',
(int) 68 => 'Muscle',
(int) 69 => 'Bladder',
(int) 70 => 'Brain',
(int) 71 => 'Breast',
(int) 72 => 'Testis',
(int) 73 => 'Brain',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Testis',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Liver',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adrenal',
(int) 86 => 'Colon',
(int) 87 => 'Heart',
(int) 88 => 'Kidney',
(int) 89 => 'Lung',
(int) 90 => 'Placenta',
(int) 91 => 'Testis',
(int) 92 => 'Bladder',
(int) 93 => 'Brain',
(int) 94 => 'Placenta',
(int) 95 => 'Lung',
(int) 96 => 'Ovary',
(int) 97 => 'Kidney',
(int) 98 => 'Brain',
(int) 99 => 'Colon',
(int) 100 => 'Placenta',
(int) 101 => 'Testis',
(int) 102 => 'Bladder',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Ovary',
(int) 106 => 'Testis',
(int) 107 => 'Bladder',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Adipose',
(int) 111 => 'Adrenal',
(int) 112 => 'Breast',
(int) 113 => 'Heart',
(int) 114 => 'Liver',
(int) 115 => 'Lung',
(int) 116 => 'Muscle',
(int) 117 => 'Placenta',
(int) 118 => 'Adrenal',
(int) 119 => 'Ovary',
(int) 120 => 'Testis',
(int) 121 => 'Liver',
(int) 122 => 'Placenta',
(int) 123 => 'Lung',
(int) 124 => 'Kidney',
(int) 125 => 'Adipose',
(int) 126 => 'Lung',
(int) 127 => 'Placenta',
(int) 128 => 'Testis',
(int) 129 => 'Muscle',
(int) 130 => 'Placenta'
)
),
'CIL_0007N0_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021743' => array(
[maximum depth reached]
),
'ENSMUSG00000021745' => array(
[maximum depth reached]
),
'ENSMUSG00000033111' => array(
[maximum depth reached]
),
'ENSMUSG00000054423' => array(
[maximum depth reached]
),
'ENSMUSG00000077158' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Heart',
(int) 25 => 'Liver',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adrenal',
(int) 42 => 'Breast',
(int) 43 => 'Breast',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Adipose',
(int) 57 => 'Adrenal',
(int) 58 => 'Bladder',
(int) 59 => 'Brain',
(int) 60 => 'Breast',
(int) 61 => 'Colon',
(int) 62 => 'Heart',
(int) 63 => 'Kidney',
(int) 64 => 'Liver',
(int) 65 => 'Lung',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Adipose',
(int) 71 => 'Adrenal',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Muscle',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Breast',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Adipose',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Adipose',
(int) 105 => 'Breast',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Ovary'
)
)
)
$gene_desc_arr = array(
'ENSG00000114405' => 'chromosome 3 open reading frame 14',
'ENSG00000144724' => 'protein tyrosine phosphatase, receptor type, G',
'ENSG00000153266' => 'FEZ family zinc finger 2',
'ENSG00000163618' => 'Ca++-dependent secretion activator',
'ENSG00000241472' => 'PTPRG antisense RNA 1',
'ENSMUSG00000021743' => 'Fez family zinc finger 2',
'ENSMUSG00000021745' => 'protein tyrosine phosphatase, receptor type, G',
'ENSMUSG00000033111' => 'RIKEN cDNA 3830406C13 gene',
'ENSMUSG00000054423' => 'Ca2+-dependent secretion activator',
'ENSMUSG00000077158' => 'predicted gene, 24578'
)
$gene_name_arr = array(
'ENSG00000114405' => 'C3orf14',
'ENSG00000144724' => 'PTPRG',
'ENSG00000153266' => 'FEZF2',
'ENSG00000163618' => 'CADPS',
'ENSG00000241472' => 'PTPRG-AS1',
'ENSMUSG00000021743' => 'Fezf2',
'ENSMUSG00000021745' => 'Ptprg',
'ENSMUSG00000033111' => '3830406C13Rik',
'ENSMUSG00000054423' => 'Cadps',
'ENSMUSG00000077158' => 'Gm24578'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N0_0001',
'tax_id' => '9606',
'chromosome' => '3',
'seq_start' => '62293307',
'seq_end' => '62421615',
'region_length' => '128308',
'region_type' => 'UCNEbase',
'el_id' => 'CADPS'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N0_0002',
'tax_id' => '10090',
'chromosome' => '14',
'seq_start' => '12237882',
'seq_end' => '12393901',
'region_length' => '156019',
'region_type' => 'UCNEbase',
'el_id' => 'CADPS'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N0_0003',
'tax_id' => '7955',
'chromosome' => '11',
'seq_start' => '5547517',
'seq_end' => '5547786',
'region_length' => '269',
'region_type' => 'UCNEbase',
'el_id' => 'CADPS'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N0_0004',
'tax_id' => '7955',
'chromosome' => '11',
'seq_start' => '20450322',
'seq_end' => '20451540',
'region_length' => '1218',
'region_type' => 'UCNEbase',
'el_id' => 'CADPS'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 37 => 'Brain',
(int) 54 => 'Breast',
(int) 76 => 'Colon',
(int) 92 => 'Heart',
(int) 108 => 'Kidney',
(int) 127 => 'Liver',
(int) 146 => 'Lung',
(int) 165 => 'Muscle',
(int) 178 => 'Ovary',
(int) 200 => 'Placenta',
(int) 224 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 63
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000232519' => array(
'start' => '62319022',
'end' => '62333646',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-006'
),
'ENST00000462069' => array(
'start' => '62318973',
'end' => '62333426',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-004'
),
'ENST00000465142' => array(
'start' => '62319032',
'end' => '62331335',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-005'
),
'ENST00000486169' => array(
'start' => '62319015',
'end' => '62324133',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'C3orf14-003'
),
'ENST00000491323' => array(
'start' => '62319072',
'end' => '62322519',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'C3orf14-002'
),
'ENST00000494481' => array(
'start' => '62319043',
'end' => '62336213',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-001'
),
'ENST00000542214' => array(
'start' => '62319721',
'end' => '62333646',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-201'
),
'ENST00000295874' => array(
'start' => '61561911',
'end' => '62293329',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-002'
),
'ENST00000468576' => array(
'start' => '62243805',
'end' => '62263465',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PTPRG-008'
),
'ENST00000474889' => array(
'start' => '61561911',
'end' => '62297613',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-001'
),
'ENST00000475012' => array(
'start' => '62217583',
'end' => '62293551',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-005'
),
'ENST00000475527' => array(
'start' => '61561851',
'end' => '61751049',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-003'
),
'ENST00000485215' => array(
'start' => '62243576',
'end' => '62267813',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-007'
),
'ENST00000495879' => array(
'start' => '61561569',
'end' => '61771395',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-006'
),
'ENST00000615556' => array(
'start' => '61989621',
'end' => '62294898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-201'
),
'ENST00000618938' => array(
'start' => '61989621',
'end' => '62294898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-202'
),
'ENST00000283268' => array(
'start' => '62369684',
'end' => '62373515',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FEZF2-001'
),
'ENST00000475839' => array(
'start' => '62369692',
'end' => '62373015',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FEZF2-002'
),
'ENST00000486811' => array(
'start' => '62369681',
'end' => '62374324',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FEZF2-004'
),
'ENST00000283269' => array(
'start' => '62398972',
'end' => '62875241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-001'
),
'ENST00000357948' => array(
'start' => '62398350',
'end' => '62875338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-006'
),
'ENST00000383710' => array(
'start' => '62398347',
'end' => '62875379',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-013'
),
'ENST00000462768' => array(
'start' => '62465367',
'end' => '62470754',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADPS-009'
),
'ENST00000463002' => array(
'start' => '62478006',
'end' => '62492346',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-011'
),
'ENST00000466621' => array(
'start' => '62403094',
'end' => '62478323',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-018'
),
'ENST00000468271' => array(
'start' => '62516114',
'end' => '62536581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-008'
),
'ENST00000469292' => array(
'start' => '62465367',
'end' => '62466681',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-014'
),
'ENST00000473635' => array(
'start' => '62398348',
'end' => '62481855',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-015'
),
'ENST00000474560' => array(
'start' => '62398352',
'end' => '62441135',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-004'
),
'ENST00000478408' => array(
'start' => '62473708',
'end' => '62478316',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-010'
),
'ENST00000478434' => array(
'start' => '62532919',
'end' => '62550889',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-007'
),
'ENST00000478570' => array(
'start' => '62474173',
'end' => '62500606',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-003'
),
'ENST00000486172' => array(
'start' => '62398348',
'end' => '62404875',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-005'
),
'ENST00000490353' => array(
'start' => '62625230',
'end' => '62875029',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-002'
),
'ENST00000490424' => array(
'start' => '62536016',
'end' => '62550114',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-012'
),
'ENST00000491424' => array(
'start' => '62491339',
'end' => '62536466',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-016'
),
'ENST00000542833' => array(
'start' => '62533022',
'end' => '62585246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-017'
),
'ENST00000612439' => array(
'start' => '62398346',
'end' => '62875389',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-201'
),
'ENST00000613879' => array(
'start' => '62398355',
'end' => '62474325',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-202'
),
'ENST00000462497' => array(
'start' => '62261825',
'end' => '62318923',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-002'
),
'ENST00000466893' => array(
'start' => '62276427',
'end' => '62318892',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-005'
),
'ENST00000469148' => array(
'start' => '62260865',
'end' => '62262740',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-010'
),
'ENST00000474795' => array(
'start' => '62261823',
'end' => '62318947',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-001'
),
'ENST00000475371' => array(
'start' => '62263875',
'end' => '62318892',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-003'
),
'ENST00000479018' => array(
'start' => '62263929',
'end' => '62318935',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-009'
),
'ENST00000479588' => array(
'start' => '62294273',
'end' => '62318632',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PTPRG-AS1-006'
),
'ENST00000490916' => array(
'start' => '62276775',
'end' => '62369326',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-008'
),
'ENST00000495542' => array(
'start' => '62264042',
'end' => '62369330',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-007'
),
'ENST00000498655' => array(
'start' => '62292634',
'end' => '62318778',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-004'
),
'ENSMUST00000022262' => array(
'start' => '12341892',
'end' => '12345865',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fezf2-201'
),
'ENSMUST00000022264' => array(
'start' => '11553532',
'end' => '12242041',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ptprg-001'
),
'ENSMUST00000119888' => array(
'start' => '12189943',
'end' => '12238563',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ptprg-004'
),
'ENSMUST00000134290' => array(
'start' => '12218946',
'end' => '12223556',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ptprg-005'
),
'ENSMUST00000142917' => array(
'start' => '11553553',
'end' => '12238564',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Ptprg-002'
),
'ENSMUST00000148113' => array(
'start' => '11553581',
'end' => '11964131',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ptprg-003'
),
'ENSMUST00000155727' => array(
'start' => '12091160',
'end' => '12122132',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ptprg-006'
),
'ENSMUST00000112669' => array(
'start' => '12284209',
'end' => '12303231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '3830406C13Rik-201'
),
'ENSMUST00000163392' => array(
'start' => '12284209',
'end' => '12303231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '3830406C13Rik-202'
),
'ENSMUST00000067491' => array(
'start' => '12372563',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-201'
),
'ENSMUST00000112657' => array(
'start' => '12372565',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-202'
),
'ENSMUST00000112658' => array(
'start' => '12372565',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-203'
),
'ENSMUST00000177814' => array(
'start' => '12372565',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-204'
),
'ENSMUST00000103970' => array(
'start' => '12333776',
'end' => '12333904',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24578-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007N0_0001' => array(
'genes_in_region' => array(
'ENSG00000114405' => array(
[maximum depth reached]
),
'ENSG00000144724' => array(
[maximum depth reached]
),
'ENSG00000153266' => array(
[maximum depth reached]
),
'ENSG00000163618' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Kidney',
(int) 6 => 'Ovary',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Adrenal',
(int) 10 => 'Breast',
(int) 11 => 'Colon',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Heart',
(int) 20 => 'Liver',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Kidney',
(int) 38 => 'Liver',
(int) 39 => 'Lung',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adrenal',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Testis',
(int) 68 => 'Muscle',
(int) 69 => 'Bladder',
(int) 70 => 'Brain',
(int) 71 => 'Breast',
(int) 72 => 'Testis',
(int) 73 => 'Brain',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Testis',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Liver',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adrenal',
(int) 86 => 'Colon',
(int) 87 => 'Heart',
(int) 88 => 'Kidney',
(int) 89 => 'Lung',
(int) 90 => 'Placenta',
(int) 91 => 'Testis',
(int) 92 => 'Bladder',
(int) 93 => 'Brain',
(int) 94 => 'Placenta',
(int) 95 => 'Lung',
(int) 96 => 'Ovary',
(int) 97 => 'Kidney',
(int) 98 => 'Brain',
(int) 99 => 'Colon',
(int) 100 => 'Placenta',
(int) 101 => 'Testis',
(int) 102 => 'Bladder',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Ovary',
(int) 106 => 'Testis',
(int) 107 => 'Bladder',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Adipose',
(int) 111 => 'Adrenal',
(int) 112 => 'Breast',
(int) 113 => 'Heart',
(int) 114 => 'Liver',
(int) 115 => 'Lung',
(int) 116 => 'Muscle',
(int) 117 => 'Placenta',
(int) 118 => 'Adrenal',
(int) 119 => 'Ovary',
(int) 120 => 'Testis',
(int) 121 => 'Liver',
(int) 122 => 'Placenta',
(int) 123 => 'Lung',
(int) 124 => 'Kidney',
(int) 125 => 'Adipose',
(int) 126 => 'Lung',
(int) 127 => 'Placenta',
(int) 128 => 'Testis',
(int) 129 => 'Muscle',
(int) 130 => 'Placenta'
)
),
'CIL_0007N0_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021743' => array(
[maximum depth reached]
),
'ENSMUSG00000021745' => array(
[maximum depth reached]
),
'ENSMUSG00000033111' => array(
[maximum depth reached]
),
'ENSMUSG00000054423' => array(
[maximum depth reached]
),
'ENSMUSG00000077158' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Heart',
(int) 25 => 'Liver',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adrenal',
(int) 42 => 'Breast',
(int) 43 => 'Breast',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Adipose',
(int) 57 => 'Adrenal',
(int) 58 => 'Bladder',
(int) 59 => 'Brain',
(int) 60 => 'Breast',
(int) 61 => 'Colon',
(int) 62 => 'Heart',
(int) 63 => 'Kidney',
(int) 64 => 'Liver',
(int) 65 => 'Lung',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Adipose',
(int) 71 => 'Adrenal',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Muscle',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Breast',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Adipose',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Adipose',
(int) 105 => 'Breast',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Ovary'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N0_0004',
'tax_id' => '7955',
'chromosome' => '11',
'seq_start' => '20450322',
'seq_end' => '20451540',
'region_length' => '1218',
'region_type' => 'UCNEbase',
'el_id' => 'CADPS'
)
)
$gene_el = array(
'ENSMUST00000103970' => array(
'Ovary' => array(
'average_FPKM' => '19.105',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000077158'
$is_first = false
$tran_el = array(
'Ovary' => array(
'average_FPKM' => '19.105',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000103970'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007N0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007N0_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000114405' => 'chromosome 3 open reading frame 14',
'ENSG00000144724' => 'protein tyrosine phosphatase, receptor type, G',
'ENSG00000153266' => 'FEZ family zinc finger 2',
'ENSG00000163618' => 'Ca++-dependent secretion activator',
'ENSG00000241472' => 'PTPRG antisense RNA 1',
'ENSMUSG00000021743' => 'Fez family zinc finger 2',
'ENSMUSG00000021745' => 'protein tyrosine phosphatase, receptor type, G',
'ENSMUSG00000033111' => 'RIKEN cDNA 3830406C13 gene',
'ENSMUSG00000054423' => 'Ca2+-dependent secretion activator',
'ENSMUSG00000077158' => 'predicted gene, 24578'
),
'gene_name_arr' => array(
'ENSG00000114405' => 'C3orf14',
'ENSG00000144724' => 'PTPRG',
'ENSG00000153266' => 'FEZF2',
'ENSG00000163618' => 'CADPS',
'ENSG00000241472' => 'PTPRG-AS1',
'ENSMUSG00000021743' => 'Fezf2',
'ENSMUSG00000021745' => 'Ptprg',
'ENSMUSG00000033111' => '3830406C13Rik',
'ENSMUSG00000054423' => 'Cadps',
'ENSMUSG00000077158' => 'Gm24578'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 37 => 'Brain',
(int) 54 => 'Breast',
(int) 76 => 'Colon',
(int) 92 => 'Heart',
(int) 108 => 'Kidney',
(int) 127 => 'Liver',
(int) 146 => 'Lung',
(int) 165 => 'Muscle',
(int) 178 => 'Ovary',
(int) 200 => 'Placenta',
(int) 224 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 63,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000232519' => array(
'start' => '62319022',
'end' => '62333646',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-006'
),
'ENST00000462069' => array(
'start' => '62318973',
'end' => '62333426',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-004'
),
'ENST00000465142' => array(
'start' => '62319032',
'end' => '62331335',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-005'
),
'ENST00000486169' => array(
'start' => '62319015',
'end' => '62324133',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'C3orf14-003'
),
'ENST00000491323' => array(
'start' => '62319072',
'end' => '62322519',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'C3orf14-002'
),
'ENST00000494481' => array(
'start' => '62319043',
'end' => '62336213',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-001'
),
'ENST00000542214' => array(
'start' => '62319721',
'end' => '62333646',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-201'
),
'ENST00000295874' => array(
'start' => '61561911',
'end' => '62293329',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-002'
),
'ENST00000468576' => array(
'start' => '62243805',
'end' => '62263465',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PTPRG-008'
),
'ENST00000474889' => array(
'start' => '61561911',
'end' => '62297613',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-001'
),
'ENST00000475012' => array(
'start' => '62217583',
'end' => '62293551',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-005'
),
'ENST00000475527' => array(
'start' => '61561851',
'end' => '61751049',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-003'
),
'ENST00000485215' => array(
'start' => '62243576',
'end' => '62267813',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-007'
),
'ENST00000495879' => array(
'start' => '61561569',
'end' => '61771395',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-006'
),
'ENST00000615556' => array(
'start' => '61989621',
'end' => '62294898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-201'
),
'ENST00000618938' => array(
'start' => '61989621',
'end' => '62294898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-202'
),
'ENST00000283268' => array(
'start' => '62369684',
'end' => '62373515',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FEZF2-001'
),
'ENST00000475839' => array(
'start' => '62369692',
'end' => '62373015',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FEZF2-002'
),
'ENST00000486811' => array(
'start' => '62369681',
'end' => '62374324',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FEZF2-004'
),
'ENST00000283269' => array(
'start' => '62398972',
'end' => '62875241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-001'
),
'ENST00000357948' => array(
'start' => '62398350',
'end' => '62875338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-006'
),
'ENST00000383710' => array(
'start' => '62398347',
'end' => '62875379',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-013'
),
'ENST00000462768' => array(
'start' => '62465367',
'end' => '62470754',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADPS-009'
),
'ENST00000463002' => array(
'start' => '62478006',
'end' => '62492346',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-011'
),
'ENST00000466621' => array(
'start' => '62403094',
'end' => '62478323',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-018'
),
'ENST00000468271' => array(
'start' => '62516114',
'end' => '62536581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-008'
),
'ENST00000469292' => array(
'start' => '62465367',
'end' => '62466681',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-014'
),
'ENST00000473635' => array(
'start' => '62398348',
'end' => '62481855',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-015'
),
'ENST00000474560' => array(
'start' => '62398352',
'end' => '62441135',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-004'
),
'ENST00000478408' => array(
'start' => '62473708',
'end' => '62478316',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-010'
),
'ENST00000478434' => array(
'start' => '62532919',
'end' => '62550889',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-007'
),
'ENST00000478570' => array(
'start' => '62474173',
'end' => '62500606',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-003'
),
'ENST00000486172' => array(
'start' => '62398348',
'end' => '62404875',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-005'
),
'ENST00000490353' => array(
'start' => '62625230',
'end' => '62875029',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-002'
),
'ENST00000490424' => array(
'start' => '62536016',
'end' => '62550114',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-012'
),
'ENST00000491424' => array(
'start' => '62491339',
'end' => '62536466',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-016'
),
'ENST00000542833' => array(
'start' => '62533022',
'end' => '62585246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-017'
),
'ENST00000612439' => array(
'start' => '62398346',
'end' => '62875389',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-201'
),
'ENST00000613879' => array(
'start' => '62398355',
'end' => '62474325',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-202'
),
'ENST00000462497' => array(
'start' => '62261825',
'end' => '62318923',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-002'
),
'ENST00000466893' => array(
'start' => '62276427',
'end' => '62318892',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-005'
),
'ENST00000469148' => array(
'start' => '62260865',
'end' => '62262740',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-010'
),
'ENST00000474795' => array(
'start' => '62261823',
'end' => '62318947',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-001'
),
'ENST00000475371' => array(
'start' => '62263875',
'end' => '62318892',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-003'
),
'ENST00000479018' => array(
'start' => '62263929',
'end' => '62318935',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-009'
),
'ENST00000479588' => array(
'start' => '62294273',
'end' => '62318632',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PTPRG-AS1-006'
),
'ENST00000490916' => array(
'start' => '62276775',
'end' => '62369326',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-008'
),
'ENST00000495542' => array(
'start' => '62264042',
'end' => '62369330',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-007'
),
'ENST00000498655' => array(
'start' => '62292634',
'end' => '62318778',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-004'
),
'ENSMUST00000022262' => array(
'start' => '12341892',
'end' => '12345865',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fezf2-201'
),
'ENSMUST00000022264' => array(
'start' => '11553532',
'end' => '12242041',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ptprg-001'
),
'ENSMUST00000119888' => array(
'start' => '12189943',
'end' => '12238563',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ptprg-004'
),
'ENSMUST00000134290' => array(
'start' => '12218946',
'end' => '12223556',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ptprg-005'
),
'ENSMUST00000142917' => array(
'start' => '11553553',
'end' => '12238564',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Ptprg-002'
),
'ENSMUST00000148113' => array(
'start' => '11553581',
'end' => '11964131',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ptprg-003'
),
'ENSMUST00000155727' => array(
'start' => '12091160',
'end' => '12122132',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ptprg-006'
),
'ENSMUST00000112669' => array(
'start' => '12284209',
'end' => '12303231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '3830406C13Rik-201'
),
'ENSMUST00000163392' => array(
'start' => '12284209',
'end' => '12303231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '3830406C13Rik-202'
),
'ENSMUST00000067491' => array(
'start' => '12372563',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-201'
),
'ENSMUST00000112657' => array(
'start' => '12372565',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-202'
),
'ENSMUST00000112658' => array(
'start' => '12372565',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-203'
),
'ENSMUST00000177814' => array(
'start' => '12372565',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-204'
),
'ENSMUST00000103970' => array(
'start' => '12333776',
'end' => '12333904',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24578-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007N0_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007N0_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007N0_0001' => array(
'genes_in_region' => array(
'ENSG00000114405' => array(
[maximum depth reached]
),
'ENSG00000144724' => array(
[maximum depth reached]
),
'ENSG00000153266' => array(
[maximum depth reached]
),
'ENSG00000163618' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Kidney',
(int) 6 => 'Ovary',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Adrenal',
(int) 10 => 'Breast',
(int) 11 => 'Colon',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Heart',
(int) 20 => 'Liver',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Kidney',
(int) 38 => 'Liver',
(int) 39 => 'Lung',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adrenal',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Testis',
(int) 68 => 'Muscle',
(int) 69 => 'Bladder',
(int) 70 => 'Brain',
(int) 71 => 'Breast',
(int) 72 => 'Testis',
(int) 73 => 'Brain',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Testis',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Liver',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adrenal',
(int) 86 => 'Colon',
(int) 87 => 'Heart',
(int) 88 => 'Kidney',
(int) 89 => 'Lung',
(int) 90 => 'Placenta',
(int) 91 => 'Testis',
(int) 92 => 'Bladder',
(int) 93 => 'Brain',
(int) 94 => 'Placenta',
(int) 95 => 'Lung',
(int) 96 => 'Ovary',
(int) 97 => 'Kidney',
(int) 98 => 'Brain',
(int) 99 => 'Colon',
(int) 100 => 'Placenta',
(int) 101 => 'Testis',
(int) 102 => 'Bladder',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Ovary',
(int) 106 => 'Testis',
(int) 107 => 'Bladder',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Adipose',
(int) 111 => 'Adrenal',
(int) 112 => 'Breast',
(int) 113 => 'Heart',
(int) 114 => 'Liver',
(int) 115 => 'Lung',
(int) 116 => 'Muscle',
(int) 117 => 'Placenta',
(int) 118 => 'Adrenal',
(int) 119 => 'Ovary',
(int) 120 => 'Testis',
(int) 121 => 'Liver',
(int) 122 => 'Placenta',
(int) 123 => 'Lung',
(int) 124 => 'Kidney',
(int) 125 => 'Adipose',
(int) 126 => 'Lung',
(int) 127 => 'Placenta',
(int) 128 => 'Testis',
(int) 129 => 'Muscle',
(int) 130 => 'Placenta'
)
),
'CIL_0007N0_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021743' => array(
[maximum depth reached]
),
'ENSMUSG00000021745' => array(
[maximum depth reached]
),
'ENSMUSG00000033111' => array(
[maximum depth reached]
),
'ENSMUSG00000054423' => array(
[maximum depth reached]
),
'ENSMUSG00000077158' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Heart',
(int) 25 => 'Liver',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adrenal',
(int) 42 => 'Breast',
(int) 43 => 'Breast',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Adipose',
(int) 57 => 'Adrenal',
(int) 58 => 'Bladder',
(int) 59 => 'Brain',
(int) 60 => 'Breast',
(int) 61 => 'Colon',
(int) 62 => 'Heart',
(int) 63 => 'Kidney',
(int) 64 => 'Liver',
(int) 65 => 'Lung',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Adipose',
(int) 71 => 'Adrenal',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Muscle',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Breast',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Adipose',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Adipose',
(int) 105 => 'Breast',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Ovary'
)
)
)
$gene_desc_arr = array(
'ENSG00000114405' => 'chromosome 3 open reading frame 14',
'ENSG00000144724' => 'protein tyrosine phosphatase, receptor type, G',
'ENSG00000153266' => 'FEZ family zinc finger 2',
'ENSG00000163618' => 'Ca++-dependent secretion activator',
'ENSG00000241472' => 'PTPRG antisense RNA 1',
'ENSMUSG00000021743' => 'Fez family zinc finger 2',
'ENSMUSG00000021745' => 'protein tyrosine phosphatase, receptor type, G',
'ENSMUSG00000033111' => 'RIKEN cDNA 3830406C13 gene',
'ENSMUSG00000054423' => 'Ca2+-dependent secretion activator',
'ENSMUSG00000077158' => 'predicted gene, 24578'
)
$gene_name_arr = array(
'ENSG00000114405' => 'C3orf14',
'ENSG00000144724' => 'PTPRG',
'ENSG00000153266' => 'FEZF2',
'ENSG00000163618' => 'CADPS',
'ENSG00000241472' => 'PTPRG-AS1',
'ENSMUSG00000021743' => 'Fezf2',
'ENSMUSG00000021745' => 'Ptprg',
'ENSMUSG00000033111' => '3830406C13Rik',
'ENSMUSG00000054423' => 'Cadps',
'ENSMUSG00000077158' => 'Gm24578'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N0_0001',
'tax_id' => '9606',
'chromosome' => '3',
'seq_start' => '62293307',
'seq_end' => '62421615',
'region_length' => '128308',
'region_type' => 'UCNEbase',
'el_id' => 'CADPS'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N0_0002',
'tax_id' => '10090',
'chromosome' => '14',
'seq_start' => '12237882',
'seq_end' => '12393901',
'region_length' => '156019',
'region_type' => 'UCNEbase',
'el_id' => 'CADPS'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N0_0003',
'tax_id' => '7955',
'chromosome' => '11',
'seq_start' => '5547517',
'seq_end' => '5547786',
'region_length' => '269',
'region_type' => 'UCNEbase',
'el_id' => 'CADPS'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N0_0004',
'tax_id' => '7955',
'chromosome' => '11',
'seq_start' => '20450322',
'seq_end' => '20451540',
'region_length' => '1218',
'region_type' => 'UCNEbase',
'el_id' => 'CADPS'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 37 => 'Brain',
(int) 54 => 'Breast',
(int) 76 => 'Colon',
(int) 92 => 'Heart',
(int) 108 => 'Kidney',
(int) 127 => 'Liver',
(int) 146 => 'Lung',
(int) 165 => 'Muscle',
(int) 178 => 'Ovary',
(int) 200 => 'Placenta',
(int) 224 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 63
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000232519' => array(
'start' => '62319022',
'end' => '62333646',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-006'
),
'ENST00000462069' => array(
'start' => '62318973',
'end' => '62333426',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-004'
),
'ENST00000465142' => array(
'start' => '62319032',
'end' => '62331335',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-005'
),
'ENST00000486169' => array(
'start' => '62319015',
'end' => '62324133',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'C3orf14-003'
),
'ENST00000491323' => array(
'start' => '62319072',
'end' => '62322519',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'C3orf14-002'
),
'ENST00000494481' => array(
'start' => '62319043',
'end' => '62336213',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-001'
),
'ENST00000542214' => array(
'start' => '62319721',
'end' => '62333646',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'C3orf14-201'
),
'ENST00000295874' => array(
'start' => '61561911',
'end' => '62293329',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-002'
),
'ENST00000468576' => array(
'start' => '62243805',
'end' => '62263465',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PTPRG-008'
),
'ENST00000474889' => array(
'start' => '61561911',
'end' => '62297613',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-001'
),
'ENST00000475012' => array(
'start' => '62217583',
'end' => '62293551',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-005'
),
'ENST00000475527' => array(
'start' => '61561851',
'end' => '61751049',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-003'
),
'ENST00000485215' => array(
'start' => '62243576',
'end' => '62267813',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-007'
),
'ENST00000495879' => array(
'start' => '61561569',
'end' => '61771395',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PTPRG-006'
),
'ENST00000615556' => array(
'start' => '61989621',
'end' => '62294898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-201'
),
'ENST00000618938' => array(
'start' => '61989621',
'end' => '62294898',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PTPRG-202'
),
'ENST00000283268' => array(
'start' => '62369684',
'end' => '62373515',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FEZF2-001'
),
'ENST00000475839' => array(
'start' => '62369692',
'end' => '62373015',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FEZF2-002'
),
'ENST00000486811' => array(
'start' => '62369681',
'end' => '62374324',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'FEZF2-004'
),
'ENST00000283269' => array(
'start' => '62398972',
'end' => '62875241',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-001'
),
'ENST00000357948' => array(
'start' => '62398350',
'end' => '62875338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-006'
),
'ENST00000383710' => array(
'start' => '62398347',
'end' => '62875379',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-013'
),
'ENST00000462768' => array(
'start' => '62465367',
'end' => '62470754',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'CADPS-009'
),
'ENST00000463002' => array(
'start' => '62478006',
'end' => '62492346',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-011'
),
'ENST00000466621' => array(
'start' => '62403094',
'end' => '62478323',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-018'
),
'ENST00000468271' => array(
'start' => '62516114',
'end' => '62536581',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-008'
),
'ENST00000469292' => array(
'start' => '62465367',
'end' => '62466681',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-014'
),
'ENST00000473635' => array(
'start' => '62398348',
'end' => '62481855',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-015'
),
'ENST00000474560' => array(
'start' => '62398352',
'end' => '62441135',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-004'
),
'ENST00000478408' => array(
'start' => '62473708',
'end' => '62478316',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-010'
),
'ENST00000478434' => array(
'start' => '62532919',
'end' => '62550889',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-007'
),
'ENST00000478570' => array(
'start' => '62474173',
'end' => '62500606',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-003'
),
'ENST00000486172' => array(
'start' => '62398348',
'end' => '62404875',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-005'
),
'ENST00000490353' => array(
'start' => '62625230',
'end' => '62875029',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-002'
),
'ENST00000490424' => array(
'start' => '62536016',
'end' => '62550114',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'CADPS-012'
),
'ENST00000491424' => array(
'start' => '62491339',
'end' => '62536466',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-016'
),
'ENST00000542833' => array(
'start' => '62533022',
'end' => '62585246',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-017'
),
'ENST00000612439' => array(
'start' => '62398346',
'end' => '62875389',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-201'
),
'ENST00000613879' => array(
'start' => '62398355',
'end' => '62474325',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'CADPS-202'
),
'ENST00000462497' => array(
'start' => '62261825',
'end' => '62318923',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-002'
),
'ENST00000466893' => array(
'start' => '62276427',
'end' => '62318892',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-005'
),
'ENST00000469148' => array(
'start' => '62260865',
'end' => '62262740',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-010'
),
'ENST00000474795' => array(
'start' => '62261823',
'end' => '62318947',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-001'
),
'ENST00000475371' => array(
'start' => '62263875',
'end' => '62318892',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-003'
),
'ENST00000479018' => array(
'start' => '62263929',
'end' => '62318935',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-009'
),
'ENST00000479588' => array(
'start' => '62294273',
'end' => '62318632',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PTPRG-AS1-006'
),
'ENST00000490916' => array(
'start' => '62276775',
'end' => '62369326',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-008'
),
'ENST00000495542' => array(
'start' => '62264042',
'end' => '62369330',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-007'
),
'ENST00000498655' => array(
'start' => '62292634',
'end' => '62318778',
'transcript_biotype' => 'antisense',
'transcript_name' => 'PTPRG-AS1-004'
),
'ENSMUST00000022262' => array(
'start' => '12341892',
'end' => '12345865',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Fezf2-201'
),
'ENSMUST00000022264' => array(
'start' => '11553532',
'end' => '12242041',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ptprg-001'
),
'ENSMUST00000119888' => array(
'start' => '12189943',
'end' => '12238563',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ptprg-004'
),
'ENSMUST00000134290' => array(
'start' => '12218946',
'end' => '12223556',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ptprg-005'
),
'ENSMUST00000142917' => array(
'start' => '11553553',
'end' => '12238564',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Ptprg-002'
),
'ENSMUST00000148113' => array(
'start' => '11553581',
'end' => '11964131',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Ptprg-003'
),
'ENSMUST00000155727' => array(
'start' => '12091160',
'end' => '12122132',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ptprg-006'
),
'ENSMUST00000112669' => array(
'start' => '12284209',
'end' => '12303231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '3830406C13Rik-201'
),
'ENSMUST00000163392' => array(
'start' => '12284209',
'end' => '12303231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => '3830406C13Rik-202'
),
'ENSMUST00000067491' => array(
'start' => '12372563',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-201'
),
'ENSMUST00000112657' => array(
'start' => '12372565',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-202'
),
'ENSMUST00000112658' => array(
'start' => '12372565',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-203'
),
'ENSMUST00000177814' => array(
'start' => '12372565',
'end' => '12823079',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Cadps-204'
),
'ENSMUST00000103970' => array(
'start' => '12333776',
'end' => '12333904',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm24578-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007N0_0001' => array(
'genes_in_region' => array(
'ENSG00000114405' => array(
[maximum depth reached]
),
'ENSG00000144724' => array(
[maximum depth reached]
),
'ENSG00000153266' => array(
[maximum depth reached]
),
'ENSG00000163618' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Kidney',
(int) 6 => 'Ovary',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Adrenal',
(int) 10 => 'Breast',
(int) 11 => 'Colon',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Muscle',
(int) 16 => 'Ovary',
(int) 17 => 'Placenta',
(int) 18 => 'Testis',
(int) 19 => 'Heart',
(int) 20 => 'Liver',
(int) 21 => 'Adipose',
(int) 22 => 'Adrenal',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Heart',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Testis',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Colon',
(int) 36 => 'Heart',
(int) 37 => 'Kidney',
(int) 38 => 'Liver',
(int) 39 => 'Lung',
(int) 40 => 'Ovary',
(int) 41 => 'Placenta',
(int) 42 => 'Testis',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Ovary',
(int) 52 => 'Placenta',
(int) 53 => 'Testis',
(int) 54 => 'Adrenal',
(int) 55 => 'Brain',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Kidney',
(int) 60 => 'Liver',
(int) 61 => 'Lung',
(int) 62 => 'Ovary',
(int) 63 => 'Placenta',
(int) 64 => 'Testis',
(int) 65 => 'Muscle',
(int) 66 => 'Ovary',
(int) 67 => 'Testis',
(int) 68 => 'Muscle',
(int) 69 => 'Bladder',
(int) 70 => 'Brain',
(int) 71 => 'Breast',
(int) 72 => 'Testis',
(int) 73 => 'Brain',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Testis',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Liver',
(int) 82 => 'Ovary',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Adrenal',
(int) 86 => 'Colon',
(int) 87 => 'Heart',
(int) 88 => 'Kidney',
(int) 89 => 'Lung',
(int) 90 => 'Placenta',
(int) 91 => 'Testis',
(int) 92 => 'Bladder',
(int) 93 => 'Brain',
(int) 94 => 'Placenta',
(int) 95 => 'Lung',
(int) 96 => 'Ovary',
(int) 97 => 'Kidney',
(int) 98 => 'Brain',
(int) 99 => 'Colon',
(int) 100 => 'Placenta',
(int) 101 => 'Testis',
(int) 102 => 'Bladder',
(int) 103 => 'Breast',
(int) 104 => 'Colon',
(int) 105 => 'Ovary',
(int) 106 => 'Testis',
(int) 107 => 'Bladder',
(int) 108 => 'Kidney',
(int) 109 => 'Liver',
(int) 110 => 'Adipose',
(int) 111 => 'Adrenal',
(int) 112 => 'Breast',
(int) 113 => 'Heart',
(int) 114 => 'Liver',
(int) 115 => 'Lung',
(int) 116 => 'Muscle',
(int) 117 => 'Placenta',
(int) 118 => 'Adrenal',
(int) 119 => 'Ovary',
(int) 120 => 'Testis',
(int) 121 => 'Liver',
(int) 122 => 'Placenta',
(int) 123 => 'Lung',
(int) 124 => 'Kidney',
(int) 125 => 'Adipose',
(int) 126 => 'Lung',
(int) 127 => 'Placenta',
(int) 128 => 'Testis',
(int) 129 => 'Muscle',
(int) 130 => 'Placenta'
)
),
'CIL_0007N0_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000021743' => array(
[maximum depth reached]
),
'ENSMUSG00000021745' => array(
[maximum depth reached]
),
'ENSMUSG00000033111' => array(
[maximum depth reached]
),
'ENSMUSG00000054423' => array(
[maximum depth reached]
),
'ENSMUSG00000077158' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Muscle',
(int) 7 => 'Ovary',
(int) 8 => 'Placenta',
(int) 9 => 'Testis',
(int) 10 => 'Adipose',
(int) 11 => 'Adrenal',
(int) 12 => 'Bladder',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Heart',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Muscle',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Heart',
(int) 25 => 'Liver',
(int) 26 => 'Ovary',
(int) 27 => 'Placenta',
(int) 28 => 'Testis',
(int) 29 => 'Adipose',
(int) 30 => 'Adrenal',
(int) 31 => 'Brain',
(int) 32 => 'Breast',
(int) 33 => 'Colon',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Ovary',
(int) 39 => 'Placenta',
(int) 40 => 'Testis',
(int) 41 => 'Adrenal',
(int) 42 => 'Breast',
(int) 43 => 'Breast',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Kidney',
(int) 51 => 'Liver',
(int) 52 => 'Lung',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Adipose',
(int) 57 => 'Adrenal',
(int) 58 => 'Bladder',
(int) 59 => 'Brain',
(int) 60 => 'Breast',
(int) 61 => 'Colon',
(int) 62 => 'Heart',
(int) 63 => 'Kidney',
(int) 64 => 'Liver',
(int) 65 => 'Lung',
(int) 66 => 'Muscle',
(int) 67 => 'Ovary',
(int) 68 => 'Placenta',
(int) 69 => 'Testis',
(int) 70 => 'Adipose',
(int) 71 => 'Adrenal',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Kidney',
(int) 78 => 'Liver',
(int) 79 => 'Lung',
(int) 80 => 'Muscle',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis',
(int) 84 => 'Adipose',
(int) 85 => 'Breast',
(int) 86 => 'Heart',
(int) 87 => 'Kidney',
(int) 88 => 'Liver',
(int) 89 => 'Lung',
(int) 90 => 'Muscle',
(int) 91 => 'Ovary',
(int) 92 => 'Placenta',
(int) 93 => 'Adipose',
(int) 94 => 'Brain',
(int) 95 => 'Breast',
(int) 96 => 'Colon',
(int) 97 => 'Heart',
(int) 98 => 'Kidney',
(int) 99 => 'Liver',
(int) 100 => 'Lung',
(int) 101 => 'Muscle',
(int) 102 => 'Ovary',
(int) 103 => 'Placenta',
(int) 104 => 'Adipose',
(int) 105 => 'Breast',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Ovary'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007N0_0004',
'tax_id' => '7955',
'chromosome' => '11',
'seq_start' => '20450322',
'seq_end' => '20451540',
'region_length' => '1218',
'region_type' => 'UCNEbase',
'el_id' => 'CADPS'
)
)
$gene_el = array(
'ENSMUST00000103970' => array(
'Ovary' => array(
'average_FPKM' => '19.105',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000077158'
$is_first = false
$tran_el = array(
'Ovary' => array(
'average_FPKM' => '19.105',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000103970'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
| Source ID |
Type |
Tax ID |
Position |
| CADPS |
UCNEbase |
7955 |
11:20450322-20451540  |
| Gene | Transcript | Position | Biotype |
|---|
(C3orf14)