C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007RH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm52 VISTA 9606 22:32494872-33098241
GeneTranscriptPositionBiotype
ENSG00000100225 (FBXO7)
F-box protein 7 		ENST00000266087 (FBXO7-001) 32474676-32498829 protein_coding
ENST00000397426 (FBXO7-002) 32475257-32498829 protein_coding
ENST00000420700 (FBXO7-003) 32474676-32498829 nonsense_mediated_decay
ENST00000425028 (FBXO7-004) 32474798-32498829 nonsense_mediated_decay
ENST00000444207 (FBXO7-007) 32475593-32483983 protein_coding
ENST00000452138 (FBXO7-006) 32475237-32484105 protein_coding
ENST00000465418 (FBXO7-008) 32478035-32479231 processed_transcript
ENST00000484607 (FBXO7-010) 32487288-32491113 retained_intron
ENST00000492535 (FBXO7-005) 32475015-32498829 retained_intron
ENSG00000100234 (TIMP3)
TIMP metallopeptidase inhibitor 3 		ENST00000266085 (TIMP3-001) 32801701-32863043 protein_coding
ENSG00000228194 (CTA-415G2.2)
 ENST00000446798 (CTA-415G2.2-002) 33014980-33015461 processed_pseudogene
ENSG00000236054 (LL22NC03-104C7.1)
 ENST00000428201 (LL22NC03-104C7.1-001) 32583300-32584204 antisense
ENSG00000279338 (RP1-309I22.2)
 ENST00000624184 (RP1-309I22.2-001) 32836706-32865634 sense_overlapping
CIL_0007RH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm52 VISTA 10090 10:85994227-86597417
GeneTranscriptPositionBiotype
ENSMUSG00000001786 (Fbxo7)
F-box protein 7 		ENSMUST00000001837 (Fbxo7-007) 86021987-86048293 nonsense_mediated_decay
ENSMUST00000117597 (Fbxo7-002) 86022197-86048323 protein_coding
ENSMUST00000120344 (Fbxo7-003) 86022189-86048323 protein_coding
ENSMUST00000130320 (Fbxo7-001) 86021972-86051873 protein_coding
ENSMUST00000130383 (Fbxo7-005) 86042452-86046809 retained_intron
ENSMUST00000134490 (Fbxo7-004) 86032971-86051871 processed_transcript
ENSMUST00000147168 (Fbxo7-006) 86022019-86029124 nonsense_mediated_decay
ENSMUSG00000020044 (Timp3)
tissue inhibitor of metalloproteinase 3 		ENSMUST00000020234 (Timp3-001) 86300372-86349506 protein_coding
ENSMUST00000132307 (Timp3-004) 86302854-86343981 protein_coding
ENSMUST00000136045 (Timp3-003) 86300556-86326834 processed_transcript
ENSMUST00000151134 (Timp3-002) 86300554-86306781 processed_transcript
ENSMUSG00000050108 (Bpifc)
BPI fold containing family C 		ENSMUST00000061699 (Bpifc-001) 85959340-86011895 protein_coding
ENSMUST00000105304 (Bpifc-002) 85995901-86011856 protein_coding
ENSMUSG00000059602 (Syn3)
synapsin III 		ENSMUST00000120638 (Syn3-001) 86055125-86498856 protein_coding
ENSMUST00000121789 (Syn3-005) 86291593-86498882 protein_coding
ENSMUST00000123783 (Syn3-003) 86347774-86491897 retained_intron
ENSMUST00000139197 (Syn3-004) 86351145-86498896 retained_intron
ENSMUST00000143319 (Syn3-006) 86057423-86066843 processed_transcript
ENSMUST00000145864 (Syn3-002) 86070502-86491897 retained_intron
ENSMUSG00000077265 (Gm24430)
predicted gene, 24430 		ENSMUST00000104077 (Gm24430-201) 86038685-86038788 snRNA
ENSMUSG00000085435 (4930486F22Rik)
RIKEN cDNA 4930486F22 gene 		ENSMUST00000131378 (4930486F22Rik-001) 86095885-86113580 antisense
ENSMUSG00000087256 (Gm15990)
predicted gene 15990 		ENSMUST00000132223 (Gm15990-001) 86125827-86129854 antisense
ENSMUSG00000090816 (Gm6729)
predicted gene 6729 		ENSMUST00000165173 (Gm6729-201) 86539883-86541334 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007RH_0001ENSG00000100225ENST00000266087ENST00000397426ENST00000420700ENST00000425028ENST00000444207ENST00000452138ENST00000465418ENST00000484607ENST00000492535ENSG00000100234ENST00000266085ENSG00000228194ENST00000446798ENSG00000236054ENST00000428201ENSG00000279338ENST00000624184CIL_0007RH_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007RH_0001ENSG00000100225ENST00000266087ENST00000397426ENST00000420700ENST00000425028ENST00000492535ENSG00000100234ENST00000266085ENSG00000228194ENST00000446798ENSG00000236054ENST00000428201ENSG00000279338ENST00000624184CIL_0007RH_0002ENSMUSG00000001786ENSMUST00000001837ENSMUST00000117597ENSMUST00000120344ENSMUST00000130320ENSMUST00000134490ENSMUSG00000020044ENSMUST00000020234ENSMUST00000136045ENSMUSG00000050108ENSMUST00000061699ENSMUSG00000059602ENSMUST00000120638ENSMUSG00000077265ENSMUST00000104077ENSMUSG00000085435ENSMUST00000131378ENSMUSG00000087256ENSMUST00000132223ENSMUSG00000090816ENSMUST00000165173
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100225 ENST00000266087 4.814±0.00 N/A 3.002±0.00 9.532±0.00 4.962±0.00 7.295±0.21 2.969±0.91 5.307±1.28 10.611±0.00 6.580±0.00 3.424±1.36 10.157±3.43 14.941±2.82 11.101±0.07
ENST00000397426 7.125±0.00 8.764±0.00 3.547±0.00 14.696±10.04 12.652±0.00 15.590±0.00 3.116±1.98 8.848±4.78 8.813±0.00 23.913±0.00 1.610±0.00 16.112±6.20 20.041±5.37 32.242±5.67
ENST00000420700 7.197±0.00 21.627±0.00 N/A N/A 9.776±0.00 N/A 3.671±0.00 21.528±0.00 N/A 13.670±0.00 N/A 16.426±6.32 15.352±5.12 26.087±1.67
ENST00000425028 9.955±0.00 N/A 2.507±0.00 N/A 13.520±0.00 N/A 3.835±0.00 8.242±0.00 7.631±0.00 12.171±7.39 7.329±0.00 12.435±3.57 18.640±0.46 19.255±4.71
ENST00000444207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465418 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492535 0.873±0.00 2.502±0.00 N/A 3.571±0.00 1.068±0.00 N/A 0.624±0.00 N/A N/A 2.169±0.10 0.384±0.00 1.457±0.41 N/A N/A
ENSG00000100234 ENST00000266085 716.689±0.00 280.857±0.00 26.124±0.00 28.417±18.74 172.480±119.52 128.068±104.14 91.585±65.69 136.103±127.96 45.463±16.45 412.504±283.37 33.756±19.04 34.864±19.83 1099.166±504.27 152.129±110.92
ENSG00000228194 ENST00000446798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00
ENSG00000236054 ENST00000428201 0.495±0.00 0.204±0.00 N/A 0.393±0.16 0.278±0.00 N/A N/A 0.168±0.00 0.173±0.00 0.501±0.00 N/A 0.585±0.00 0.313±0.20 0.851±0.00
ENSG00000279338 ENST00000624184 N/A N/A 1.302±0.00 0.420±0.00 1.360±0.00 0.442±0.00 0.509±0.00 N/A 1.383±0.00 5.810±0.00 0.936±0.00 0.914±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001786 ENSMUST00000001837 2.884±0.50 3.368±0.60 N/A N/A 4.373±1.85 3.011±0.58 1.312±0.00 6.087±0.00 N/A 2.763±0.42 N/A 3.574±0.00 3.893±2.12 N/A
ENSMUST00000117597 8.220±1.41 2.084±0.26 8.415±1.88 N/A 7.322±3.76 4.005±0.98 4.810±0.49 19.755±0.76 10.990±6.00 5.768±0.67 4.212±0.33 8.160±3.23 5.041±2.91 14.377±5.14
ENSMUST00000120344 N/A 3.753±0.45 N/A N/A 2.199±0.00 1.689±0.21 N/A 9.005±2.40 9.660±7.87 N/A N/A 4.020±0.68 2.197±0.69 3.012±0.00
ENSMUST00000130320 1.761±0.27 6.126±1.27 1.520±0.00 3.590±0.43 2.138±0.74 2.243±0.21 0.703±0.10 4.661±0.52 2.048±0.71 2.472±0.56 0.349±0.04 3.306±1.56 0.585±0.00 1.131±0.10
ENSMUST00000130383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134490 N/A N/A 1.450±0.00 1.501±0.18 N/A N/A N/A N/A N/A N/A N/A 0.608±0.03 0.131±0.00 N/A
ENSMUST00000147168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020044 ENSMUST00000020234 64.773±11.62 83.543±8.62 88.639±0.50 7.705±1.77 45.590±5.97 22.088±3.21 36.675±4.28 279.835±42.06 3.497±0.48 131.907±16.75 23.821±3.36 56.259±18.53 16.109±16.67 5.582±1.81
ENSMUST00000132307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136045 N/A 156.835±11.88 N/A N/A 48.755±5.29 15.149±1.16 N/A N/A N/A 87.533±0.00 N/A N/A N/A N/A
ENSMUST00000151134 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000050108 ENSMUST00000061699 0.015±0.00 0.275±0.11 0.061±0.02 0.021±0.01 0.282±0.20 N/A 0.022±0.00 0.064±0.02 0.016±0.01 1.120±0.82 0.073±0.02 0.601±0.35 0.047±0.05 0.168±0.12
ENSMUST00000105304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000059602 ENSMUST00000120638 N/A N/A N/A 6.928±3.99 N/A N/A N/A N/A 0.491±0.00 N/A N/A N/A N/A N/A
ENSMUST00000121789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000077265 ENSMUST00000104077 N/A N/A N/A 44.889±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085435 ENSMUST00000131378 0.025±0.00 N/A 0.016±0.01 0.058±0.00 N/A 0.070±0.00 N/A 0.031±0.00 0.006±0.00 N/A N/A 0.019±0.00 0.011±0.01 0.182±0.13
ENSMUSG00000087256 ENSMUST00000132223 0.010±0.00 0.096±0.00 0.014±0.00 0.127±0.10 0.018±0.00 0.032±0.00 0.020±0.00 0.310±0.16 0.012±0.00 0.065±0.04 0.012±0.00 0.006±0.00 0.073±0.04 1.079±0.09
ENSMUSG00000090816 ENSMUST00000165173 N/A N/A 0.021±0.00 0.010±0.00 N/A N/A N/A 0.047±0.00 0.008±0.00 N/A N/A 0.016±0.00 0.033±0.02 8.430±3.48

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