C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00088N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs826 VISTA 9606 10:22901909-23502579
GeneTranscriptPositionBiotype
ENSG00000148450 (MSRB2)
methionine sulfoxide reductase B2 		ENST00000376510 (MSRB2-001) 23095506-23122013 protein_coding
ENST00000468633 (MSRB2-003) 23119144-23120893 processed_transcript
ENST00000472663 (MSRB2-002) 23104144-23120954 nonsense_mediated_decay
ENSG00000165309 (ARMC3)
armadillo repeat containing 3 		ENST00000298032 (ARMC3-001) 22928024-23037587 protein_coding
ENST00000376528 (ARMC3-201) 22928024-23038523 protein_coding
ENST00000409049 (ARMC3-010) 22928064-23014489 protein_coding
ENST00000409983 (ARMC3-009) 22928037-23037589 protein_coding
ENST00000447081 (ARMC3-012) 22928085-22961966 protein_coding
ENST00000464017 (ARMC3-006) 22955196-22961727 processed_transcript
ENST00000465729 (ARMC3-008) 22931996-22946683 retained_intron
ENST00000468003 (ARMC3-014) 22928085-22968342 processed_transcript
ENST00000473919 (ARMC3-005) 23030631-23031195 retained_intron
ENST00000483596 (ARMC3-013) 22928086-22962067 processed_transcript
ENST00000484642 (ARMC3-007) 22928077-22981608 processed_transcript
ENST00000491803 (ARMC3-004) 23006735-23008374 processed_transcript
ENST00000496741 (ARMC3-011) 22928077-22981453 processed_transcript
ENSG00000165312 (OTUD1)
OTU deubiquitinase 1 		ENST00000376495 (OTUD1-001) 23439458-23442390 protein_coding
ENSG00000168267 (PTF1A)
pancreas specific transcription factor, 1a 		ENST00000376504 (PTF1A-001) 23192327-23194252 protein_coding
ENSG00000179133 (C10orf67)
chromosome 10 open reading frame 67 		ENST00000323327 (C10orf67-001) 23316737-23344845 protein_coding
ENST00000376500 (C10orf67-002) 23267195-23343964 protein_coding
ENSG00000204566 (C10orf115)
long intergenic non-protein coding RNA 1552 		ENST00000376501 (C10orf115-001) 23203816-23239816 lincRNA
ENSG00000221221 (AL139815.1)
 ENST00000408294 (AL139815.1-201) 23074383-23074478 miRNA
ENSG00000223131 (RNA5SP304)
RNA, 5S ribosomal pseudogene 304 		ENST00000411199 (RNA5SP304-201) 22997255-22997358 rRNA
ENSG00000224215 (RP11-371A19.2)
 ENST00000443224 (RP11-371A19.2-001) 23343957-23345181 antisense
ENSG00000229932 (YWHAZP3)
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 3 		ENST00000415292 (YWHAZP3-001) 23136924-23137661 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00088N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs826 VISTA 10090 2:19155026-19755689
GeneTranscriptPositionBiotype
ENSMUSG00000023094 (Msrb2)
methionine sulfoxide reductase B2 		ENSMUST00000023856 (Msrb2-001) 19371636-19394976 protein_coding
ENSMUST00000126894 (Msrb2-002) 19371668-19393320 processed_transcript
ENSMUST00000137812 (Msrb2-004) 19371440-19383284 processed_transcript
ENSMUST00000153289 (Msrb2-003) 19371841-19394264 processed_transcript
ENSMUSG00000026734 (4921504E06Rik)
RIKEN cDNA 4921504E06 gene 		ENSMUST00000062060 (4921504E06Rik-001) 19462837-19553914 protein_coding
ENSMUST00000131199 (4921504E06Rik-002) 19493699-19553914 retained_intron
ENSMUSG00000026735 (Ptf1a)
pancreas specific transcription factor, 1a 		ENSMUST00000028068 (Ptf1a-001) 19445663-19447501 protein_coding
ENSMUSG00000037683 (Armc3)
armadillo repeat containing 3 		ENSMUST00000049255 (Armc3-002) 19199302-19310241 protein_coding
ENSMUST00000114640 (Armc3-001) 19199302-19310241 protein_coding
ENSMUSG00000043415 (Otud1)
OTU domain containing 1 		ENSMUST00000052168 (Otud1-001) 19657752-19660583 protein_coding
ENSMUSG00000056329 (1810010K12Rik)
RIKEN cDNA 1810010K12 gene 		ENSMUST00000070378 (1810010K12Rik-201) 19451828-19453151 processed_transcript
ENSMUST00000149577 (1810010K12Rik-001) 19452470-19454995 processed_transcript
ENSMUSG00000080227 (Gm13343)
predicted gene 13343 		ENSMUST00000116474 (Gm13343-001) 19652244-19652348 processed_pseudogene
ENSMUSG00000083893 (Gm13347)
predicted gene 13347 		ENSMUST00000120298 (Gm13347-001) 19677251-19678603 processed_pseudogene
ENSMUSG00000085388 (Ptf1aos)
pancreas specific transcription factor 1a, opposite strand 		ENSMUST00000122978 (Ptf1aos-001) 19441508-19446674 antisense
ENSMUSG00000086621 (Gm13348)
predicted gene 13348 		ENSMUST00000147324 (Gm13348-001) 19634034-19636986 antisense
ENSMUSG00000087103 (Gm13344)
predicted gene 13344 		ENSMUST00000137714 (Gm13344-001) 19429104-19431983 antisense
ENSMUSG00000087246 (Gm13346)
predicted gene 13346 		ENSMUST00000135767 (Gm13346-001) 19676711-19686157 lincRNA
ENSMUSG00000087674 (4930447M23Rik)
RIKEN cDNA 4930447M23 gene 		ENSMUST00000136456 (4930447M23Rik-003) 19344937-19348936 lincRNA
ENSMUST00000141289 (4930447M23Rik-001) 19344317-19349202 lincRNA
ENSMUST00000150514 (4930447M23Rik-002) 19344838-19351050 lincRNA

Mus musculus Ensembl (GRCm38)

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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00088N_0001ENSG00000148450ENST00000376510ENST00000468633ENST00000472663ENSG00000165309ENST00000298032ENST00000376528ENST00000409049ENST00000409983ENST00000447081ENST00000464017ENST00000465729ENST00000468003ENST00000473919ENST00000483596ENST00000484642ENST00000491803ENST00000496741ENSG00000165312ENST00000376495ENSG00000168267ENST00000376504ENSG00000179133ENST00000323327ENST00000376500ENSG00000204566ENST00000376501ENSG00000221221ENST00000408294ENSG00000223131ENST00000411199ENSG00000224215ENST00000443224ENSG00000229932ENST00000415292CIL_00088N_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00088N_0001ENSG00000148450ENST00000376510ENST00000468633ENST00000472663ENSG00000165309ENST00000298032ENST00000376528ENST00000409049ENST00000409983ENST00000464017ENST00000468003ENST00000483596ENST00000491803ENST00000496741ENSG00000165312ENST00000376495ENSG00000168267ENST00000376504ENSG00000179133ENST00000323327ENST00000376500ENSG00000204566ENST00000376501ENSG00000221221ENST00000408294ENSG00000223131ENST00000411199ENSG00000224215ENST00000443224ENSG00000229932ENST00000415292CIL_00088N_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000148450 ENST00000376510 2.693±0.00 2.621±0.00 0.650±0.00 2.056±0.68 3.692±2.81 3.411±2.11 6.207±4.57 2.390±1.15 2.178±0.52 2.480±1.71 2.408±0.41 4.526±3.51 5.051±1.82 1.512±0.73
ENST00000468633 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.233±0.00 8.244±0.00 N/A N/A N/A
ENST00000472663 6.984±0.00 10.432±0.00 N/A 9.962±7.79 31.292±0.00 24.535±0.00 53.651±0.00 14.262±11.95 31.399±0.00 21.025±0.00 16.935±0.00 15.401±4.36 18.578±5.74 8.211±5.81
ENSG00000165309 ENST00000298032 N/A N/A N/A 0.114±0.00 N/A N/A N/A N/A N/A 0.911±0.00 N/A 1.958±0.00 N/A 3.724±0.00
ENST00000376528 N/A N/A N/A 0.118±0.00 N/A N/A N/A N/A N/A 0.796±0.00 N/A N/A N/A N/A
ENST00000409049 N/A N/A N/A 0.640±0.00 N/A N/A N/A N/A N/A 1.159±0.00 N/A N/A 0.022±0.00 N/A
ENST00000409983 N/A N/A N/A N/A 0.008±0.00 0.078±0.00 0.021±0.00 0.060±0.00 N/A 1.273±0.00 N/A 0.050±0.00 0.011±0.00 13.247±1.03
ENST00000447081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464017 N/A N/A N/A 0.214±0.00 N/A N/A N/A N/A N/A N/A N/A 0.035±0.02 0.016±0.00 N/A
ENST00000465729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.234±0.17 N/A N/A
ENST00000473919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483596 N/A N/A 0.987±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.354±0.00 0.078±0.00 N/A
ENST00000496741 N/A N/A N/A N/A N/A N/A N/A 0.109±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000165312 ENST00000376495 9.003±0.00 6.793±0.00 3.756±0.00 2.959±1.07 6.416±3.08 4.426±0.76 14.810±11.45 4.540±2.26 2.294±1.03 6.684±0.86 13.595±4.46 6.871±2.70 5.280±1.52 7.338±2.44
ENSG00000168267 ENST00000376504 N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A 1.258±0.65
ENSG00000179133 ENST00000323327 N/A N/A 0.130±0.00 0.030±0.00 0.009±0.00 N/A 0.078±0.05 0.085±0.00 0.004±0.00 N/A N/A 0.058±0.01 0.025±0.00 N/A
ENST00000376500 N/A N/A N/A 0.138±0.00 0.041±0.00 0.091±0.00 N/A 0.136±0.00 N/A 0.464±0.19 0.152±0.00 0.254±0.18 0.035±0.00 5.863±3.14
ENSG00000204566 ENST00000376501 N/A N/A 0.366±0.00 0.090±0.00 N/A N/A N/A 0.647±0.00 N/A 1.235±0.00 N/A 0.180±0.11 N/A 3.960±0.00
ENSG00000221221 ENST00000408294 0.255±0.00 1.334±0.00 N/A 0.840±0.00 N/A 0.744±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223131 ENST00000411199 N/A N/A N/A N/A N/A N/A N/A 1.436±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000224215 ENST00000443224 0.018±0.00 N/A N/A 0.072±0.00 N/A 0.077±0.00 0.216±0.00 N/A N/A 0.463±0.00 0.046±0.00 0.354±0.26 0.099±0.02 N/A
ENSG00000229932 ENST00000415292 0.196±0.00 0.131±0.00 N/A 0.136±0.09 0.056±0.00 0.069±0.00 0.034±0.00 0.094±0.00 0.017±0.00 0.018±0.00 N/A 0.213±0.17 0.056±0.00 0.081±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023094 ENSMUST00000023856 24.402±5.45 14.000±2.42 12.697±2.14 5.627±4.65 11.152±3.21 3.340±0.75 41.012±1.13 26.122±0.78 8.515±2.03 11.199±0.99 9.046±1.06 19.509±6.44 1.568±0.64 3.829±0.49
ENSMUST00000126894 N/A 4.650±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.705±0.00 N/A
ENSMUST00000137812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153289 N/A N/A N/A 21.864±0.00 N/A N/A N/A N/A N/A N/A N/A 49.132±0.00 5.248±1.30 N/A
ENSMUSG00000026734 ENSMUST00000062060 N/A N/A N/A 0.016±0.01 N/A N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A 6.690±4.46
ENSMUST00000131199 N/A N/A N/A 0.018±0.00 N/A N/A N/A 0.084±0.01 N/A 0.061±0.00 N/A 0.026±0.01 N/A 5.617±3.99
ENSMUSG00000026735 ENSMUST00000028068 0.054±0.00 N/A N/A 0.201±0.16 N/A 0.981±0.14 N/A N/A 0.027±0.03 0.017±0.00 N/A 0.044±0.00 N/A 0.030±0.01
ENSMUSG00000037683 ENSMUST00000049255 0.051±0.03 N/A 0.038±0.02 0.199±0.09 0.035±0.01 0.174±0.11 0.025±0.01 0.053±0.02 0.025±0.02 0.801±0.10 0.016±0.01 0.644±0.27 0.013±0.00 16.598±6.41
ENSMUST00000114640 N/A N/A N/A 0.107±0.04 0.007±0.00 0.003±0.00 N/A 0.006±0.00 0.059±0.05 1.009±0.00 N/A 0.110±0.00 N/A 8.774±3.21
ENSMUSG00000043415 ENSMUST00000052168 3.140±0.88 6.768±1.82 3.460±0.23 1.180±0.36 6.600±4.51 3.261±0.35 2.740±0.20 3.299±0.79 1.003±0.39 13.262±2.84 5.554±2.11 6.552±2.66 0.507±0.40 5.909±2.16
ENSMUSG00000056329 ENSMUST00000070378 N/A 0.057±0.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.03 N/A N/A
ENSMUST00000149577 0.045±0.00 N/A N/A 0.043±0.02 N/A 0.088±0.00 N/A N/A N/A 0.064±0.00 N/A 0.044±0.00 N/A N/A
ENSMUSG00000080227 ENSMUST00000116474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.186±0.00
ENSMUSG00000083893 ENSMUST00000120298 N/A N/A N/A 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A 0.083±0.03 N/A N/A
ENSMUSG00000085388 ENSMUST00000122978 N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086621 ENSMUST00000147324 N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A 0.080±0.00 1.456±0.59
ENSMUSG00000087103 ENSMUST00000137714 0.021±0.00 N/A 0.011±0.00 0.204±0.27 N/A 0.043±0.00 0.039±0.01 N/A 0.004±0.00 0.030±0.00 0.039±0.00 0.038±0.03 N/A N/A
ENSMUSG00000087246 ENSMUST00000135767 N/A N/A 0.002±0.00 0.003±0.00 N/A N/A 0.008±0.00 N/A 0.002±0.00 0.012±0.00 N/A 0.045±0.02 N/A N/A
ENSMUSG00000087674 ENSMUST00000136456 0.187±0.12 N/A N/A 0.658±0.00 N/A N/A N/A N/A N/A 0.095±0.00 N/A 0.555±0.34 N/A 1.258±0.33
ENSMUST00000141289 0.024±0.00 0.039±0.00 N/A N/A 0.048±0.02 0.037±0.00 0.017±0.00 0.061±0.04 0.014±0.01 0.029±0.00 N/A 0.126±0.08 N/A 0.726±0.50
ENSMUST00000150514 0.599±0.00 0.168±0.00 N/A 1.716±0.03 0.300±0.00 N/A 0.085±0.03 N/A 0.014±0.00 0.071±0.00 N/A 0.318±0.17 N/A 2.036±0.30

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