C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008CM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1364 VISTA 9606 8:57955651-58557562
GeneTranscriptPositionBiotype
ENSG00000137575 (SDCBP)
syndecan binding protein (syntenin) 		ENST00000260130 (SDCBP-001) 58553169-58582860 protein_coding
ENST00000413219 (SDCBP-002) 58553217-58582830 protein_coding
ENST00000424270 (SDCBP-004) 58553237-58582056 protein_coding
ENST00000447182 (SDCBP-003) 58553216-58582846 protein_coding
ENST00000447267 (SDCBP-012) 58565016-58581759 protein_coding
ENST00000519115 (SDCBP-013) 58553261-58578384 retained_intron
ENST00000520168 (SDCBP-006) 58553255-58582053 protein_coding
ENST00000520228 (SDCBP-009) 58570712-58578070 retained_intron
ENST00000522243 (SDCBP-008) 58552924-58572301 processed_transcript
ENST00000522843 (SDCBP-010) 58553262-58576366 retained_intron
ENST00000523441 (SDCBP-011) 58577993-58579949 retained_intron
ENST00000523483 (SDCBP-005) 58553254-58582858 protein_coding
ENSG00000167910 (CYP7A1)
cytochrome P450, family 7, subfamily A, polypeptide 1 		ENST00000301645 (CYP7A1-001) 58490178-58500236 protein_coding
ENSG00000169122 (FAM110B)
family with sequence similarity 110, member B 		ENST00000361488 (FAM110B-001) 57994554-58148788 protein_coding
ENST00000518427 (FAM110B-008) 58070207-58075623 processed_transcript
ENST00000519262 (FAM110B-006) 57994509-58145999 processed_transcript
ENST00000520369 (FAM110B-007) 57994568-58204279 processed_transcript
ENST00000521413 (FAM110B-009) 58070318-58146037 processed_transcript
ENST00000522059 (FAM110B-003) 58031616-58146040 processed_transcript
ENST00000523486 (FAM110B-004) 58070227-58198092 processed_transcript
ENSG00000205293 (RP11-1112C15.1)
 ENST00000522992 (RP11-1112C15.1-001) 57978358-57984126 lincRNA
ENSG00000215114 (UBXN2B)
UBX domain protein 2B 		ENST00000399598 (UBXN2B-001) 58411264-58451501 protein_coding
ENST00000520732 (UBXN2B-004) 58411381-58446065 nonsense_mediated_decay
ENST00000521796 (UBXN2B-006) 58416930-58435106 protein_coding
ENST00000522978 (UBXN2B-002) 58411359-58434941 processed_transcript
ENST00000523409 (UBXN2B-005) 58411381-58447684 nonsense_mediated_decay
ENSG00000242595 (RP11-648L3.1)
 ENST00000480251 (RP11-648L3.1-001) 58113189-58113622 processed_pseudogene
ENSG00000250031 (RP11-114M5.1)
 ENST00000510501 (RP11-114M5.1-001) 58424588-58426685 processed_pseudogene
ENSG00000253116 (RP11-648L3.2)
 ENST00000518536 (RP11-648L3.2-001) 58091442-58106294 lincRNA
ENSG00000253281 (RP11-716D16.1)
 ENST00000518779 (RP11-716D16.1-003) 58259738-58272042 lincRNA
ENST00000519981 (RP11-716D16.1-001) 58255771-58272101 lincRNA
ENST00000522744 (RP11-716D16.1-002) 58260673-58272119 lincRNA
ENST00000523886 (RP11-716D16.1-004) 58259731-58260753 retained_intron
ENSG00000254103 (RP11-114M5.3)
 ENST00000520812 (RP11-114M5.3-001) 58503588-58504068 processed_pseudogene
CIL_0008CM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1364 VISTA 10090 4:5662013-6263794
GeneTranscriptPositionBiotype
ENSMUSG00000028243 (Ubxn2b)
UBX domain protein 2B 		ENSMUST00000029907 (Ubxn2b-001) 6191098-6221688 protein_coding
ENSMUSG00000049119 (Fam110b)
family with sequence similarity 110, member B 		ENSMUST00000054857 (Fam110b-001) 5644121-5801101 protein_coding
ENSMUST00000108380 (Fam110b-002) 5724312-5801101 protein_coding
ENSMUST00000124256 (Fam110b-005) 5644090-5798382 processed_transcript
ENSMUST00000126564 (Fam110b-004) 5644235-6108223 processed_transcript
ENSMUST00000141479 (Fam110b-006) 5644190-5798494 processed_transcript
ENSMUST00000144605 (Fam110b-003) 5644125-5733523 retained_intron
ENSMUST00000145365 (Fam110b-008) 5798084-5798531 processed_transcript
ENSMUST00000156582 (Fam110b-007) 5772879-5798845 protein_coding
ENSMUST00000171403 (Fam110b-201) 5772879-5799946 protein_coding
ENSMUSG00000083232 (Gm11796)
predicted gene 11796 		ENSMUST00000120208 (Gm11796-001) 5854516-5855487 processed_pseudogene
ENSMUSG00000084360 (Gm11797)
predicted gene 11797 		ENSMUST00000121336 (Gm11797-001) 6069874-6070627 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008CM_0001ENSG00000137575ENST00000260130ENST00000413219ENST00000424270ENST00000447182ENST00000447267ENST00000519115ENST00000520228ENST00000522843ENSG00000167910ENST00000301645ENSG00000169122ENST00000361488ENST00000518427ENST00000519262ENST00000522059ENSG00000205293ENST00000522992ENSG00000215114ENST00000399598ENST00000520732ENST00000521796ENST00000522978ENSG00000242595ENST00000480251ENSG00000250031ENST00000510501ENSG00000253116ENST00000518536ENSG00000253281ENST00000518779ENST00000519981ENST00000522744ENST00000523886ENSG00000254103ENST00000520812CIL_0008CM_0002ENSMUSG00000028243ENSMUST00000029907ENSMUSG00000049119ENSMUST00000054857ENSMUST00000108380ENSMUST00000124256ENSMUST00000171403ENSMUSG00000083232ENSMUST00000120208ENSMUSG00000084360ENSMUST00000121336
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137575 ENST00000260130 47.072±0.00 27.546±0.00 N/A 14.568±0.00 33.881±0.00 32.431±0.00 7.171±0.00 8.824±0.00 3.702±0.00 49.309±0.00 4.005±0.00 15.567±8.50 14.264±2.39 20.945±0.00
ENST00000413219 N/A 9.179±0.00 N/A N/A 5.648±0.00 N/A 12.665±0.00 12.824±9.96 6.273±0.00 17.511±8.98 5.445±0.00 28.228±0.00 55.519±2.44 7.017±0.00
ENST00000424270 52.704±0.00 14.841±0.00 2.508±0.00 17.339±0.00 19.882±0.00 15.747±7.91 5.984±0.00 4.834±0.00 N/A N/A 4.184±1.62 20.060±9.10 88.209±0.00 9.639±0.00
ENST00000447182 42.804±0.00 20.402±0.00 3.280±0.00 13.177±6.61 18.682±6.62 24.298±18.04 13.278±9.20 12.298±8.80 7.130±1.28 38.902±19.32 4.504±1.20 14.465±5.15 35.755±6.79 13.591±4.84
ENST00000447267 N/A N/A N/A N/A N/A N/A N/A 4.799±0.00 N/A N/A N/A N/A N/A 6.283±0.00
ENST00000519115 N/A N/A N/A 7.408±0.00 9.582±0.00 N/A N/A 8.882±0.00 N/A 25.903±0.00 N/A N/A N/A N/A
ENST00000520168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.566±0.00
ENST00000522243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522843 N/A N/A 3.915±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000167910 ENST00000301645 0.003±0.00 0.037±0.00 0.018±0.00 0.003±0.00 0.035±0.01 N/A 0.016±0.00 5.457±5.45 0.027±0.01 0.043±0.00 N/A 0.027±0.00 0.031±0.02 0.066±0.03
ENSG00000169122 ENST00000361488 N/A 0.266±0.00 0.154±0.00 N/A N/A 0.063±0.00 4.796±0.00 N/A 0.124±0.00 0.080±0.00 N/A 1.744±1.17 N/A 3.353±0.70
ENST00000518427 N/A N/A 2.303±0.00 N/A N/A N/A 10.452±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000519262 N/A N/A N/A N/A N/A N/A N/A N/A 1.534±0.00 N/A N/A N/A N/A N/A
ENST00000520369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522059 N/A N/A N/A N/A N/A 2.280±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000205293 ENST00000522992 0.033±0.00 0.157±0.00 N/A 0.118±0.00 0.112±0.00 0.068±0.00 0.030±0.00 0.017±0.00 0.049±0.00 0.096±0.00 N/A 0.048±0.01 0.321±0.21 0.067±0.04
ENSG00000215114 ENST00000399598 1.808±0.00 1.404±0.00 N/A 4.129±0.00 2.112±0.00 2.324±1.25 1.602±1.02 3.369±0.91 1.258±0.21 1.693±0.31 1.412±0.56 1.698±1.16 1.143±0.21 3.118±1.89
ENST00000520732 N/A N/A 1.900±0.00 N/A 2.216±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.003±0.00 N/A
ENST00000522978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.658±0.00
ENST00000523409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242595 ENST00000480251 0.210±0.00 N/A N/A N/A 0.160±0.00 N/A 0.633±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000250031 ENST00000510501 0.049±0.00 0.015±0.00 0.415±0.00 0.150±0.10 0.068±0.05 0.143±0.08 0.058±0.02 0.076±0.02 0.243±0.16 0.250±0.17 0.168±0.00 0.039±0.02 N/A 0.008±0.00
ENSG00000253116 ENST00000518536 0.069±0.00 0.294±0.00 N/A 0.202±0.00 0.025±0.00 N/A 0.158±0.00 0.147±0.00 N/A 0.373±0.28 N/A N/A N/A 0.022±0.00
ENSG00000253281 ENST00000518779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.320±0.00
ENST00000519981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.102±0.00
ENST00000522744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.253±0.00
ENST00000523886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.092±0.00 0.178±0.00
ENSG00000254103 ENST00000520812 N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028243 ENSMUST00000029907 2.037±1.14 5.284±0.44 2.454±0.32 3.987±0.87 1.618±0.42 1.388±0.28 0.597±0.05 2.697±0.32 3.175±3.02 2.213±0.23 0.215±0.06 5.107±0.60 0.970±0.52 1.213±0.50
ENSMUSG00000049119 ENSMUST00000054857 1.329±0.96 1.445±0.39 0.977±0.13 3.899±2.14 0.669±0.11 0.932±0.25 0.315±0.09 0.417±0.22 0.122±0.05 0.537±0.17 0.317±0.10 2.759±1.59 0.943±0.19 0.525±0.19
ENSMUST00000108380 N/A N/A N/A 2.659±1.27 N/A N/A 0.569±0.21 0.269±0.06 0.125±0.02 N/A 0.470±0.15 0.660±0.00 N/A N/A
ENSMUST00000124256 N/A 2.570±1.01 N/A N/A 1.141±0.00 1.559±0.00 N/A N/A 0.145±0.06 N/A N/A 5.183±1.15 N/A N/A
ENSMUST00000126564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171403 3.118±1.75 2.091±0.34 2.661±0.44 24.257±2.79 2.060±0.76 2.628±0.61 1.261±0.47 1.061±0.31 0.307±0.19 1.634±0.16 0.538±0.17 5.978±2.37 5.839±2.35 1.960±0.20
ENSMUSG00000083232 ENSMUST00000120208 N/A N/A 0.008±0.00 0.042±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000084360 ENSMUST00000121336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.055±0.01

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