C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008MP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm192 VISTA 9606 6:11285786-11888473
GeneTranscriptPositionBiotype
ENSG00000111859 (NEDD9)
neural precursor cell expressed, developmentally down-regulated 9 		ENST00000379433 (NEDD9-003) 11198308-11232658 protein_coding
ENST00000379446 (NEDD9-001) 11183298-11232682 protein_coding
ENST00000397378 (NEDD9-010) 11213644-11382299 protein_coding
ENST00000448183 (NEDD9-008) 11183306-11382314 nonsense_mediated_decay
ENST00000459670 (NEDD9-006) 11305066-11382306 processed_transcript
ENST00000461055 (NEDD9-004) 11328525-11382318 processed_transcript
ENST00000468612 (NEDD9-005) 11248933-11382338 retained_intron
ENST00000504387 (NEDD9-002) 11184818-11382348 protein_coding
ENST00000504634 (NEDD9-012) 11271446-11382332 processed_transcript
ENST00000505589 (NEDD9-015) 11190858-11192567 retained_intron
ENST00000508546 (NEDD9-007) 11213722-11382310 protein_coding
ENST00000508800 (NEDD9-009) 11352157-11382348 processed_transcript
ENST00000512665 (NEDD9-013) 11251264-11382272 retained_intron
ENST00000513989 (NEDD9-014) 11213633-11382303 protein_coding
ENST00000514660 (NEDD9-011) 11305853-11382308 retained_intron
ENST00000620854 (NEDD9-201) 11183301-11232682 protein_coding
ENSG00000111863 (ADTRP)
androgen-dependent TFPI-regulating protein 		ENST00000229583 (ADTRP-004) 11714378-11778803 protein_coding
ENST00000379415 (ADTRP-002) 11735568-11807046 protein_coding
ENST00000414691 (ADTRP-001) 11713524-11779170 protein_coding
ENST00000485323 (ADTRP-003) 11738533-11778759 nonsense_mediated_decay
ENST00000503285 (ADTRP-009) 11717130-11735656 protein_coding
ENST00000505099 (ADTRP-010) 11712054-11766332 nonsense_mediated_decay
ENST00000506810 (ADTRP-007) 11735570-11779628 protein_coding
ENST00000512139 (ADTRP-008) 11714321-11767804 processed_transcript
ENST00000513651 (ADTRP-006) 11713954-11728557 processed_transcript
ENST00000514824 (ADTRP-005) 11713675-11736714 processed_transcript
ENSG00000202313 (RNU1-64P)
RNA, U1 small nuclear 64, pseudogene 		ENST00000365443 (RNU1-64P-201) 11503509-11503671 snRNA
ENSG00000205269 (TMEM170B)
transmembrane protein 170B 		ENST00000379426 (TMEM170B-001) 11538278-11583524 protein_coding
ENSG00000215124 (RP3-420J14.1)
 ENST00000299540 (RP3-420J14.1-001) 11861626-11862970 processed_pseudogene
ENSG00000218020 (PRKRIRP5)
protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 5 		ENST00000405864 (PRKRIRP5-001) 11514192-11516466 transcribed_processed_pseudogene
ENSG00000233656 (RP11-716O23.1)
 ENST00000419796 (RP11-716O23.1-001) 11417350-11481239 lincRNA
ENSG00000234427 (RP3-413H6.2)
 ENST00000412132 (RP3-413H6.2-001) 11810602-11811248 lincRNA
ENSG00000242753 (RP11-716O23.2)
 ENST00000423149 (RP11-716O23.2-001) 11487226-11515710 lincRNA
ENSG00000271897 (RP11-679B17.2)
 ENST00000607169 (RP11-679B17.2-001) 11607552-11607981 lincRNA
ENSG00000277473 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000622203 (Metazoa_SRP.1-431) 11644067-11644343 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008MP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm192 VISTA 10090 13:41343212-41944683
GeneTranscriptPositionBiotype
ENSMUSG00000021365 (Nedd9)
neural precursor cell expressed, developmentally down-regulated gene 9 		ENSMUST00000021794 (Nedd9-201) 41309916-41487320 protein_coding
ENSMUST00000163623 (Nedd9-202) 41309916-41359001 protein_coding
ENSMUSG00000054258 (Gm5082)
predicted gene 5082 		ENSMUST00000067176 (Gm5082-201) 41655697-41656524 protein_coding
ENSMUSG00000058022 (Adtrp)
androgen dependent TFPI regulating protein 		ENSMUST00000072012 (Adtrp-002) 41763148-41847488 protein_coding
ENSMUST00000121404 (Adtrp-001) 41764133-41847684 protein_coding
ENSMUST00000137905 (Adtrp-003) 41777513-41828453 protein_coding
ENSMUST00000179758 (Adtrp-201) 41764590-41847616 protein_coding
ENSMUSG00000085759 (1700061E18Rik)
RIKEN cDNA 1700061E18 gene 		ENSMUST00000154159 (1700061E18Rik-001) 41800783-41801795 antisense
ENSMUSG00000087370 (Tmem170b)
transmembrane protein 170B 		ENSMUST00000129449 (Tmem170b-201) 41606216-41641347 protein_coding
ENSMUSG00000092835 (Gm24819)
predicted gene, 24819 		ENSMUST00000175094 (Gm24819-201) 41577909-41578074 snRNA
ENSMUSG00000097373 (Gm26877)
predicted gene, 26877 		ENSMUST00000180728 (Gm26877-201) 41359971-41370908 lincRNA
ENSMUSG00000099672 (RP23-21E23.4)
predicted gene 28564 		ENSMUST00000190864 (RP23-21E23.4-001) 41843014-41849768 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008MP_0001ENSG00000111859ENST00000379433ENST00000379446ENST00000397378ENST00000448183ENST00000459670ENST00000461055ENST00000468612ENST00000504387ENST00000504634ENST00000505589ENST00000508546ENST00000508800ENST00000512665ENST00000513989ENST00000514660ENST00000620854ENSG00000111863ENST00000229583ENST00000379415ENST00000414691ENST00000485323ENST00000503285ENST00000505099ENST00000506810ENST00000512139ENST00000513651ENST00000514824ENSG00000202313ENST00000365443ENSG00000205269ENST00000379426ENSG00000215124ENST00000299540ENSG00000218020ENST00000405864ENSG00000233656ENST00000419796ENSG00000234427ENST00000412132ENSG00000242753ENST00000423149ENSG00000271897ENST00000607169ENSG00000277473ENST00000622203CIL_0008MP_0002ENSMUSG00000021365ENSMUST00000021794ENSMUST00000163623ENSMUSG00000054258ENSMUST00000067176ENSMUSG00000058022ENSMUST00000072012ENSMUST00000121404ENSMUST00000137905ENSMUST00000179758ENSMUSG00000085759ENSMUST00000154159ENSMUSG00000087370ENSMUST00000129449ENSMUSG00000092835ENSMUST00000175094ENSMUSG00000097373ENSMUST00000180728ENSMUSG00000099672ENSMUST00000190864
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111859 ENST00000379433 N/A N/A 1.352±0.00 N/A N/A N/A 0.677±0.00 N/A 1.671±0.00 4.043±0.00 1.288±0.00 2.684±0.00 N/A N/A
ENST00000379446 44.313±0.00 12.581±0.00 3.142±0.00 2.505±1.71 11.806±2.44 8.200±5.75 5.975±4.06 14.503±14.24 3.980±1.45 27.543±9.33 3.438±1.58 4.195±1.43 24.035±15.69 6.759±5.40
ENST00000397378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504387 15.695±0.00 5.223±0.00 N/A N/A N/A N/A N/A N/A N/A 54.718±0.00 3.101±0.00 6.146±0.00 12.200±0.00 N/A
ENST00000504634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620854 N/A N/A N/A N/A N/A N/A N/A N/A 1.195±0.00 N/A N/A N/A 11.385±0.00 N/A
ENSG00000111863 ENST00000229583 N/A N/A N/A 0.240±0.00 N/A N/A 0.041±0.00 N/A N/A 1.355±0.00 N/A 0.155±0.00 N/A N/A
ENST00000379415 N/A N/A N/A N/A 0.276±0.00 N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A N/A
ENST00000414691 N/A N/A N/A N/A 0.249±0.00 12.278±0.00 0.016±0.00 N/A N/A N/A N/A 0.070±0.05 0.167±0.06 N/A
ENST00000485323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505099 0.107±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.294±0.00 N/A
ENST00000506810 0.100±0.00 N/A N/A 0.277±0.00 N/A 11.517±0.00 N/A N/A 0.418±0.00 N/A N/A N/A N/A 5.399±1.91
ENST00000512139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.224±0.00 0.501±0.00 N/A
ENST00000513651 N/A 1.076±0.00 N/A 0.219±0.00 0.302±0.00 0.377±0.00 0.015±0.00 0.678±0.27 0.054±0.00 1.178±0.00 N/A N/A 0.111±0.00 1.586±0.00
ENST00000514824 0.036±0.00 0.412±0.00 N/A 0.125±0.00 N/A N/A N/A 0.241±0.00 0.120±0.09 N/A 0.017±0.00 0.031±0.00 0.053±0.00 N/A
ENSG00000202313 ENST00000365443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.600±0.00 N/A
ENSG00000205269 ENST00000379426 2.016±0.00 0.655±0.00 1.371±0.00 6.904±0.88 0.866±0.44 0.901±0.05 0.881±0.08 2.513±1.05 1.717±0.60 1.171±0.15 1.206±0.47 0.519±0.24 0.538±0.34 2.276±0.56
ENSG00000215124 ENST00000299540 0.181±0.00 0.509±0.00 N/A 0.181±0.00 0.198±0.03 0.052±0.00 0.182±0.00 0.558±0.22 0.524±0.00 0.168±0.06 0.107±0.00 0.131±0.11 N/A 0.107±0.08
ENSG00000218020 ENST00000405864 N/A N/A N/A 0.013±0.00 0.015±0.00 N/A 0.007±0.00 N/A N/A N/A N/A N/A N/A 0.118±0.11
ENSG00000233656 ENST00000419796 N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.091±0.00 2.389±0.76
ENSG00000234427 ENST00000412132 N/A 0.030±0.00 0.142±0.00 0.350±0.00 N/A N/A 0.027±0.00 0.135±0.00 N/A N/A N/A 0.050±0.00 N/A 0.081±0.00
ENSG00000242753 ENST00000423149 N/A N/A N/A N/A 0.104±0.00 N/A N/A N/A N/A 0.056±0.00 N/A N/A 0.063±0.00 0.545±0.08
ENSG00000271897 ENST00000607169 N/A 0.205±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.092±0.01 0.259±0.00 0.151±0.00
ENSG00000277473 ENST00000622203 N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021365 ENSMUST00000021794 1.891±0.62 1.096±0.45 N/A 0.156±0.00 6.669±1.66 N/A 1.960±0.35 3.129±1.16 1.025±0.82 8.564±1.13 0.364±0.21 1.605±0.20 N/A 0.141±0.02
ENSMUST00000163623 12.047±2.52 5.943±0.68 5.908±1.12 3.674±1.93 5.806±0.77 31.073±2.26 4.522±0.40 9.621±2.66 1.236±1.37 28.536±2.76 1.404±0.29 12.839±2.09 4.788±3.27 0.984±0.28
ENSMUSG00000054258 ENSMUST00000067176 0.083±0.03 N/A 0.012±0.00 0.034±0.00 0.098±0.04 N/A N/A 0.038±0.00 0.029±0.02 0.283±0.13 0.084±0.00 0.241±0.11 0.070±0.05 0.099±0.07
ENSMUSG00000058022 ENSMUST00000072012 0.733±0.00 0.187±0.00 0.942±0.16 0.014±0.00 N/A 1.024±0.00 N/A 3.759±0.17 5.327±4.02 0.265±0.10 0.018±0.01 0.215±0.15 0.988±0.24 N/A
ENSMUST00000121404 N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A 0.028±0.00 0.394±0.36 1.880±0.41 3.558±0.00
ENSMUST00000137905 2.785±1.17 1.805±0.53 N/A 0.072±0.01 5.878±1.87 10.564±2.21 0.829±0.06 34.392±12.34 33.271±27.84 0.692±0.36 0.111±0.00 0.691±0.28 7.142±0.44 11.394±2.70
ENSMUST00000179758 3.256±1.85 2.778±1.28 8.262±1.27 0.089±0.00 8.702±7.34 3.588±1.39 0.799±0.24 19.301±14.44 35.906±35.88 1.358±0.92 0.062±0.02 0.821±0.44 8.357±5.11 4.248±1.41
ENSMUSG00000085759 ENSMUST00000154159 0.110±0.00 0.177±0.00 0.126±0.00 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A 0.103±0.00 0.087±0.07 3.116±1.79
ENSMUSG00000087370 ENSMUST00000129449 2.193±0.12 2.520±0.84 1.537±0.69 4.968±1.03 2.235±0.70 1.659±0.66 2.204±0.13 1.849±0.40 2.097±0.79 3.144±0.58 3.264±0.53 2.271±0.68 1.808±0.40 0.803±0.35
ENSMUSG00000092835 ENSMUST00000175094 N/A N/A N/A N/A N/A N/A N/A N/A N/A 116.260±0.00 N/A 3.453±0.00 N/A N/A
ENSMUSG00000097373 ENSMUST00000180728 0.247±0.17 0.214±0.00 0.102±0.05 0.107±0.01 0.224±0.10 N/A 0.154±0.06 0.089±0.03 0.085±0.03 0.166±0.06 0.066±0.02 0.232±0.09 0.062±0.06 1.032±0.37
ENSMUSG00000099672 ENSMUST00000190864 N/A N/A N/A N/A N/A N/A N/A N/A 1.145±0.00 N/A N/A N/A N/A N/A

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