C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008RP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs92 VISTA 9606 16:7536531-8138031
GeneTranscriptPositionBiotype
ENSG00000078328 (RBFOX1)
RNA binding protein, fox-1 homolog (C. elegans) 1 		ENST00000311745 (RBFOX1-001) 7332750-7712504 protein_coding
ENST00000340209 (RBFOX1-201) 7332750-7713338 protein_coding
ENST00000355637 (RBFOX1-002) 7332750-7712504 protein_coding
ENST00000422070 (RBFOX1-009) 6019703-7709781 protein_coding
ENST00000436368 (RBFOX1-011) 7332750-7710844 protein_coding
ENST00000535565 (RBFOX1-005) 6483179-7709776 protein_coding
ENST00000547338 (RBFOX1-008) 6773809-7710844 protein_coding
ENST00000547372 (RBFOX1-010) 6019593-7711458 protein_coding
ENST00000547427 (RBFOX1-012) 6483324-7328793 processed_transcript
ENST00000547605 (RBFOX1-014) 6019094-7653846 protein_coding
ENST00000548749 (RBFOX1-013) 6019703-6723887 processed_transcript
ENST00000550418 (RBFOX1-003) 6019131-7713338 protein_coding
ENST00000551752 (RBFOX1-007) 6483793-7653846 protein_coding
ENST00000552089 (RBFOX1-006) 6483386-7710763 protein_coding
ENST00000553186 (RBFOX1-004) 6019131-7710840 protein_coding
ENST00000564850 (RBFOX1-015) 7597217-7630626 retained_intron
ENST00000567470 (RBFOX1-018) 7653866-7710819 protein_coding
ENST00000569889 (RBFOX1-017) 7422778-7579785 processed_transcript
ENST00000570188 (RBFOX1-016) 7664764-7710844 retained_intron
ENST00000570626 (RBFOX1-019) 7510122-7595641 protein_coding
ENST00000620507 (RBFOX1-202) 7332750-7713338 protein_coding
ENSG00000260289 (CTD-2535I10.1)
 ENST00000567103 (CTD-2535I10.1-001) 7888489-7894395 lincRNA
ENSG00000261198 (RP11-26O3.1)
 ENST00000565247 (RP11-26O3.1-001) 7614230-7614992 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0008RP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs92 VISTA 10090 16:7220398-7821914
GeneTranscriptPositionBiotype
ENSMUSG00000008658 (Rbfox1)
RNA binding protein, fox-1 homolog (C. elegans) 1 		ENSMUST00000056416 (Rbfox1-201) 7069835-7412479 protein_coding
ENSMUST00000115841 (Rbfox1-202) 6809222-7409813 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008RP_0001ENSG00000078328ENST00000311745ENST00000340209ENST00000355637ENST00000422070ENST00000436368ENST00000535565ENST00000547338ENST00000547372ENST00000547427ENST00000547605ENST00000548749ENST00000550418ENST00000551752ENST00000552089ENST00000553186ENST00000564850ENST00000567470ENST00000569889ENST00000570188ENST00000570626ENST00000620507ENSG00000260289ENST00000567103ENSG00000261198ENST00000565247CIL_0008RP_0002ENSMUSG00000008658ENSMUST00000056416ENSMUST00000115841
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008RP_0001ENSG00000078328ENST00000311745ENST00000340209ENST00000355637ENST00000436368ENST00000547372ENST00000547427ENST00000550418ENST00000552089ENST00000567470ENST00000569889ENST00000620507ENSG00000260289ENST00000567103ENSG00000261198ENST00000565247CIL_0008RP_0002ENSMUSG00000008658ENSMUST00000056416ENSMUST00000115841
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000078328 ENST00000311745 0.004±0.00 N/A 0.035±0.00 6.570±0.00 N/A 0.090±0.00 3.975±0.00 0.076±0.00 0.082±0.00 N/A N/A 0.115±0.00 N/A 0.321±0.00
ENST00000340209 N/A N/A N/A N/A 0.071±0.00 N/A 1.338±0.12 N/A N/A N/A 9.257±8.05 N/A 0.091±0.00 N/A
ENST00000355637 N/A N/A N/A N/A 0.203±0.00 N/A 2.928±0.84 N/A N/A N/A 15.909±11.90 N/A N/A 0.115±0.00
ENST00000422070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436368 N/A N/A N/A N/A 0.222±0.00 N/A 4.872±0.00 N/A N/A N/A 3.842±0.00 N/A N/A N/A
ENST00000535565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547372 0.004±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A
ENST00000547427 N/A N/A 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550418 N/A N/A N/A 6.811±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A
ENST00000551752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.578±0.00
ENST00000553186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.442±0.00 N/A
ENST00000569889 N/A N/A N/A N/A 1.048±0.00 0.461±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620507 N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A 0.012±0.00 N/A
ENSG00000260289 ENST00000567103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.02 0.092±0.07
ENSG00000261198 ENST00000565247 N/A N/A N/A 0.067±0.00 N/A N/A 0.079±0.06 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008658 ENSMUST00000056416 0.016±0.00 0.102±0.01 N/A 16.709±7.12 1.061±0.76 0.043±0.01 4.385±1.21 0.238±0.06 0.022±0.01 0.608±0.21 43.636±2.26 0.080±0.03 0.010±0.00 0.037±0.02
ENSMUST00000115841 0.066±0.03 1.086±0.28 0.073±0.00 28.821±19.05 2.353±3.77 0.766±0.20 4.539±0.00 1.924±0.19 0.050±0.01 0.880±0.22 N/A 1.044±0.28 0.047±0.00 0.150±0.08

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