C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559595 RP11-522B15.6-001 ENSG00000259614 9606 - 15:96388214-96389056 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000559595
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000559595 0.016±0.00 0.216±0.00 0.071±0.00 0.251±0.08 0.435±0.00 0.143±0.00 0.098±0.00 0.578±0.00 0.492±0.46 0.410±0.18 0.064±0.00 0.212±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007O7 CIL_0007O7_0001 UCNEbase 15:94530989-96398057
CIL_000932 CIL_000932_0001 VISTA 15:96284824-96887064

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077991 Gm5620-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000058914 Tuba1c-201 protein_coding Mus_musculus 0 516
ENSMUST00000077577 Tuba1b-001 protein_coding Mus_musculus 0 510
ENSMUST00000078739 Gm17383-201 pseudogene Mus_musculus 0 497
ENSMUST00000122404 Gm14150-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000136329 Tuba1a-003 processed_transcript Mus_musculus 0 477
ENSMUST00000097014 Tuba1a-001 protein_coding Mus_musculus 0 477
ENSMUST00000134214 Tuba1a-002 processed_transcript Mus_musculus 0 355
ENSMUST00000122283 Gm15599-001 unprocessed_pseudogene Mus_musculus 0 233
ENSMUST00000029297 Slc7a11-001 protein_coding Mus_musculus 0 215
ENSDART00000066177 tuba2-001 protein_coding Danio_rerio 0 198

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