C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000006124 cops2-001 ENSDARG00000004785 7955 - 25:33344712-33360304 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000006124
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000006124 27.307±9.42 12.558±8.62 10.264±6.74 2.516±0.00 10.242±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QE CIL_0004QE_0001 CGP 25:33344712-33378850

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0008180 IEA COP9 signalosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028635 Cops2-002 protein_coding Mus_musculus 0 1109
ENSMUST00000110462 Cops2-003 protein_coding Mus_musculus 0 431
ENSMUST00000110463 Cops2-001 protein_coding Mus_musculus 0 1016
ENSMUST00000139343 Cops2-004 processed_transcript Mus_musculus 0 351
ENSMUST00000152683 Cops2-005 processed_transcript Mus_musculus 2e-16 90
ENST00000299259 COPS2-003 protein_coding Homo_sapiens 0 987
ENST00000388901 COPS2-001 protein_coding Homo_sapiens 0 1077
ENST00000542928 COPS2-002 protein_coding Homo_sapiens 0.00000000000004 84
ENST00000558545 COPS2-004 retained_intron Homo_sapiens 0 355
ENST00000558843 COPS2-006 protein_coding Homo_sapiens 0 680
ENST00000561248 COPS2-005 protein_coding Homo_sapiens 0.00000000000001 84

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