C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 signalosome subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000388901 COPS2-001 ENSG00000166200 9606 - 15:49122728-49155652 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000388901
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000388901 3.140±0.00 0.849±0.00 0.852±0.00 2.257±0.00 2.580±0.73 2.513±1.39 2.150±1.04 2.784±0.00 1.914±0.07 2.121±0.00 2.482±1.79 3.292±0.19 1.602±0.49 4.135±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002PL CIL_0002PL_0001 CGP 15:48988476-49155661
CIL_0004QE CIL_0004QE_0002 CGP 15:49106068-49367869

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004871 NAS signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007165 NAS signal transduction
GO:0008180 IDA COP9 signalosome
GO:0010388 IDA cullin deneddylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110463 Cops2-001 protein_coding Mus_musculus 0 3965
ENSMUST00000028635 Cops2-002 protein_coding Mus_musculus 0 2894
ENSMUST00000110462 Cops2-003 protein_coding Mus_musculus 0 1751
ENSDART00000006124 cops2-001 protein_coding Danio_rerio 0 1077
ENSDART00000133872 cops2-002 protein_coding Danio_rerio 0 686
ENSMUST00000139343 Cops2-004 processed_transcript Mus_musculus 0 568
ENSMUST00000152683 Cops2-005 processed_transcript Mus_musculus 1e-34 154

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