C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NK2 homeobox 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000007829 nkx2.1a-001 ENSDARG00000010461 7955 - 20:49077771-49081251 protein_coding

Danio rerio EnsemblZv9

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000007829
Transcript ID Brain Heart Kidney Muscle
ENSDART00000007829 1.800±0.00 0.102±0.00 0.073±0.00 0.047±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0030878 IMP thyroid gland development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001536 Nkx2-1-002 protein_coding Mus_musculus 0 193
ENSMUST00000015723 Nkx2-5-001 protein_coding Mus_musculus 1e-24 119
ENSMUST00000067020 Nkx2-4-001 protein_coding Mus_musculus 0 233
ENSMUST00000072631 Nkx2-9-001 protein_coding Mus_musculus 1e-17 95
ENSMUST00000178477 Nkx2-1-001 protein_coding Mus_musculus 0 193
ENST00000325017 NKX2-6-001 protein_coding Homo_sapiens 3e-17 94
ENST00000329198 NKX2-5-001 protein_coding Homo_sapiens 6e-27 126
ENST00000351817 NKX2-4-001 protein_coding Homo_sapiens 0 217
ENST00000354822 NKX2-1-002 protein_coding Homo_sapiens 0 220
ENST00000357878 HMX3-001 protein_coding Homo_sapiens 0.00002 55
ENST00000377142 NKX2-2-001 protein_coding Homo_sapiens 1e-30 139
ENST00000424406 NKX2-5-003 protein_coding Homo_sapiens 4e-27 126
ENST00000498187 NKX2-1-001 protein_coding Homo_sapiens 0 220
ENST00000518149 NKX2-1-004 protein_coding Homo_sapiens 0 220
ENST00000521848 NKX2-5-004 protein_coding Homo_sapiens 4e-27 126
ENST00000522719 NKX2-1-003 protein_coding Homo_sapiens 0 220

Loading