C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000017668 ptbp1a-001 ENSDARG00000019362 7955 + 2:26436471-26448789 protein_coding

Danio rerio EnsemblZv9

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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000017668
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000017668 2.521±0.94 8.376±4.55 28.969±2.26 1.548±0.00 3.822±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0009953 IMP dorsal/ventral pattern formation
GO:0045746 IMP negative regulation of Notch signaling pathway
GO:0060472 IMP positive regulation of cortical granule exocytosis by positive regulation of cytosolic calcium ion concentration
GO:0060729 IMP intestinal epithelial structure maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057343 Ptbp1-008 nonsense_mediated_decay Mus_musculus 0 399
ENSMUST00000095457 Ptbp1-005 protein_coding Mus_musculus 0 355
ENSMUST00000165153 Ptbp1-004 retained_intron Mus_musculus 0 468
ENSMUST00000165704 Ptbp1-002 protein_coding Mus_musculus 0 399
ENSMUST00000165724 Ptbp1-017 nonsense_mediated_decay Mus_musculus 7.00649e-44 182
ENSMUST00000171216 Ptbp1-016 retained_intron Mus_musculus 0 355
ENSMUST00000172282 Ptbp1-001 protein_coding Mus_musculus 0 638

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