C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165704 Ptbp1-002 ENSMUSG00000006498 10090 + 10:79854629-79864771 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000165704
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000165704 27.173±5.73 21.068±4.37 14.440±0.64 20.334±2.35 3.934±0.00 20.014±4.68 7.806±0.53 26.672±5.50 45.166±7.70 10.284±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_00051Q CIL_00051Q_0002 CGP 10:79821021-79864771
CIL_00008B CIL_00008B_0002 CGP 10:79854427-79874634

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0048025 IMP negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000017668 ptbp1a-001 protein_coding Danio_rerio 0 399
ENST00000349038 PTBP1-003 protein_coding Homo_sapiens 0 1989
ENST00000350092 PTBP1-019 protein_coding Homo_sapiens 0 985
ENST00000356948 PTBP1-001 protein_coding Homo_sapiens 0 1116
ENST00000394601 PTBP1-002 protein_coding Homo_sapiens 0 1055
ENST00000554374 PTBP1P-001 processed_pseudogene Homo_sapiens 0 1399
ENST00000585856 PTBP1-007 retained_intron Homo_sapiens 0 758
ENST00000585932 PTBP1-014 nonsense_mediated_decay Homo_sapiens 0 758
ENST00000585956 PTBP1-016 protein_coding Homo_sapiens 0 459
ENST00000586481 PTBP1-013 protein_coding Homo_sapiens 0 505
ENST00000586944 PTBP1-004 retained_intron Homo_sapiens 0 1088
ENST00000587136 PTBP1-008 retained_intron Homo_sapiens 0 292
ENST00000587191 PTBP1-017 protein_coding Homo_sapiens 0 398
ENST00000589575 PTBP1-006 protein_coding Homo_sapiens 0 791
ENST00000590887 PTBP1-005 retained_intron Homo_sapiens 0 244
ENST00000592113 PTBP1-018 retained_intron Homo_sapiens 0 551
ENST00000592804 PTBP1-010 retained_intron Homo_sapiens 0 244
ENST00000621737 PTBP1-015 nonsense_mediated_decay Homo_sapiens 0 699

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