C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172282 Ptbp1-001 ENSMUSG00000006498 10090 + 10:79854427-79864432 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172282
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172282 32.507±4.87 37.468±10.61 18.876±2.24 21.429±8.52 23.584±3.90 5.143±1.40 24.652±1.95 24.920±12.45 25.099±3.29 2.187±0.73 40.644±13.89 39.517±2.28 19.947±0.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_00051Q CIL_00051Q_0002 CGP 10:79821021-79864771
CIL_00008B CIL_00008B_0002 CGP 10:79854427-79874634

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IEA regulation of alternative mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0016020 IEA membrane
GO:0033119 IEA negative regulation of RNA splicing
GO:0036002 IEA pre-mRNA binding
GO:0044822 IEA poly(A) RNA binding
GO:0048025 IMP negative regulation of mRNA splicing, via spliceosome
GO:0051148 IEA negative regulation of muscle cell differentiation
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000017668 ptbp1a-001 protein_coding Danio_rerio 0 638
ENST00000349038 PTBP1-003 protein_coding Homo_sapiens 0 1094
ENST00000350092 PTBP1-019 protein_coding Homo_sapiens 0 1975
ENST00000356948 PTBP1-001 protein_coding Homo_sapiens 0 2202
ENST00000394601 PTBP1-002 protein_coding Homo_sapiens 0 1941
ENST00000554374 PTBP1P-001 processed_pseudogene Homo_sapiens 0 815
ENST00000585856 PTBP1-007 retained_intron Homo_sapiens 0 758
ENST00000585932 PTBP1-014 nonsense_mediated_decay Homo_sapiens 0 758
ENST00000585956 PTBP1-016 protein_coding Homo_sapiens 0 634
ENST00000586481 PTBP1-013 protein_coding Homo_sapiens 0 505
ENST00000586944 PTBP1-004 retained_intron Homo_sapiens 0 1090
ENST00000587136 PTBP1-008 retained_intron Homo_sapiens 0 211
ENST00000587191 PTBP1-017 protein_coding Homo_sapiens 0 398
ENST00000589575 PTBP1-006 protein_coding Homo_sapiens 0 791
ENST00000590887 PTBP1-005 retained_intron Homo_sapiens 0 244
ENST00000592113 PTBP1-018 retained_intron Homo_sapiens 0 547
ENST00000592804 PTBP1-010 retained_intron Homo_sapiens 0 339
ENST00000621737 PTBP1-015 nonsense_mediated_decay Homo_sapiens 0 617

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