C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165153 Ptbp1-004 ENSMUSG00000006498 10090 + 10:79854633-79863818 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderColonLiverMuscleOvaryPlacentaENSMUST00000165153
Transcript ID Adrenal Bladder Colon Liver Muscle Ovary Placenta
ENSMUST00000165153 15.748±0.91 19.134±0.00 23.512±5.67 23.110±16.73 1.486±0.00 38.047±5.13 61.018±26.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_00051Q CIL_00051Q_0002 CGP 10:79821021-79864771
CIL_00008B CIL_00008B_0002 CGP 10:79854427-79874634

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000017668 ptbp1a-001 protein_coding Danio_rerio 0 468
ENST00000349038 PTBP1-003 protein_coding Homo_sapiens 0 898
ENST00000350092 PTBP1-019 protein_coding Homo_sapiens 0 1347
ENST00000356948 PTBP1-001 protein_coding Homo_sapiens 0 1347
ENST00000394601 PTBP1-002 protein_coding Homo_sapiens 0 1251
ENST00000554374 PTBP1P-001 processed_pseudogene Homo_sapiens 0 592
ENST00000585856 PTBP1-007 retained_intron Homo_sapiens 0 758
ENST00000585932 PTBP1-014 nonsense_mediated_decay Homo_sapiens 0 758
ENST00000585956 PTBP1-016 protein_coding Homo_sapiens 0 534
ENST00000586481 PTBP1-013 protein_coding Homo_sapiens 0 505
ENST00000586944 PTBP1-004 retained_intron Homo_sapiens 0 817
ENST00000587136 PTBP1-008 retained_intron Homo_sapiens 0 211
ENST00000587191 PTBP1-017 protein_coding Homo_sapiens 0 398
ENST00000589575 PTBP1-006 protein_coding Homo_sapiens 0 643
ENST00000590887 PTBP1-005 retained_intron Homo_sapiens 0 244
ENST00000592113 PTBP1-018 retained_intron Homo_sapiens 0 359
ENST00000592804 PTBP1-010 retained_intron Homo_sapiens 0 339
ENST00000621737 PTBP1-015 nonsense_mediated_decay Homo_sapiens 0 575

Loading