C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypyrimidine tract binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171216 Ptbp1-016 ENSMUSG00000006498 10090 + 10:79858994-79860125 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastENSMUST00000171216
Transcript ID Adipose Breast
ENSMUST00000171216 110.145±0.08 20.252±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_00051Q CIL_00051Q_0002 CGP 10:79821021-79864771
CIL_00008B CIL_00008B_0002 CGP 10:79854427-79874634

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000017668 ptbp1a-001 protein_coding Danio_rerio 0 355
ENST00000349038 PTBP1-003 protein_coding Homo_sapiens 0 857
ENST00000350092 PTBP1-019 protein_coding Homo_sapiens 0 863
ENST00000356948 PTBP1-001 protein_coding Homo_sapiens 0 863
ENST00000394601 PTBP1-002 protein_coding Homo_sapiens 0 857
ENST00000554374 PTBP1P-001 processed_pseudogene Homo_sapiens 0 671
ENST00000585956 PTBP1-016 protein_coding Homo_sapiens 0 464
ENST00000586481 PTBP1-013 protein_coding Homo_sapiens 0 412
ENST00000586944 PTBP1-004 retained_intron Homo_sapiens 0 859
ENST00000587136 PTBP1-008 retained_intron Homo_sapiens 0 211
ENST00000589575 PTBP1-006 protein_coding Homo_sapiens 0 610
ENST00000590887 PTBP1-005 retained_intron Homo_sapiens 0 244
ENST00000592113 PTBP1-018 retained_intron Homo_sapiens 0 547
ENST00000592804 PTBP1-010 retained_intron Homo_sapiens 0 250
ENST00000621737 PTBP1-015 nonsense_mediated_decay Homo_sapiens 0 617

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