C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and senescent cell antigen-like domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000033980 lims1-201 ENSDARG00000026985 7955 - 11:34434877-34454717 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000033980
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000033980 3.692±0.08 12.656±4.52 8.220±1.74 0.500±0.00 7.158±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding
GO:0014704 IDA intercalated disc
GO:0030018 IDA Z disc
GO:0046872 IEA metal ion binding
GO:0051896 IMP regulation of protein kinase B signaling
GO:0060047 IMP heart contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020077 Lims1-002 protein_coding Mus_musculus 0 725
ENSMUST00000020078 Lims1-001 protein_coding Mus_musculus 0 815
ENSMUST00000105468 Lims1-003 protein_coding Mus_musculus 0 813
ENSMUST00000124312 Lims1-004 processed_transcript Mus_musculus 0 241
ENST00000324938 LIMS2-005 protein_coding Homo_sapiens 0 749
ENST00000355119 LIMS2-001 protein_coding Homo_sapiens 0 749
ENST00000409254 LIMS2-012 protein_coding Homo_sapiens 0 599
ENST00000409286 LIMS2-009 protein_coding Homo_sapiens 0 599
ENST00000409455 LIMS2-004 protein_coding Homo_sapiens 0 749
ENST00000409754 LIMS2-008 protein_coding Homo_sapiens 0 599
ENST00000409808 LIMS2-002 protein_coding Homo_sapiens 0 749
ENST00000410011 LIMS2-003 protein_coding Homo_sapiens 0 749
ENST00000410038 LIMS2-006 protein_coding Homo_sapiens 0 599
ENST00000413578 LIMS2-013 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000426981 LIMS2-007 protein_coding Homo_sapiens 0 329
ENST00000466410 LIMS2-011 retained_intron Homo_sapiens 0 239
ENST00000469300 LIMS2-014 retained_intron Homo_sapiens 0 211
ENST00000476932 LIMS2-017 retained_intron Homo_sapiens 0 649
ENST00000484252 LIMS2-015 retained_intron Homo_sapiens 0 239
ENST00000545738 LIMS2-018 protein_coding Homo_sapiens 0 749
ENST00000612860 LIMS2-201 protein_coding Homo_sapiens 0 599

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