C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and senescent cell antigen-like domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355119 LIMS2-001 ENSG00000072163 9606 - 2:127638428-127675190 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355119
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355119 18.494±0.00 35.867±0.00 0.833±0.00 3.586±0.00 19.506±17.90 244.297±0.00 70.447±0.00 17.507±0.00 3.633±0.38 18.095±15.98 6.794±0.00 17.810±1.41 27.726±1.98 39.350±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000197 CIL_000197_0001 CGP 2:127638381-127681786

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0008270 IEA zinc ion binding
GO:0034329 TAS cell junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025254 Lims2-201 protein_coding Mus_musculus 0 1275
ENSDART00000033980 lims1-201 protein_coding Danio_rerio 0 749
ENSMUST00000105468 Lims1-003 protein_coding Mus_musculus 0 638
ENSMUST00000020078 Lims1-001 protein_coding Mus_musculus 0 638
ENSMUST00000020077 Lims1-002 protein_coding Mus_musculus 0 569
ENSMUST00000119116 Gm15665-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000064016 Gpr17-001 protein_coding Mus_musculus 1e-35 156
ENSMUST00000148799 Lims1-005 processed_transcript Mus_musculus 6e-23 113

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