C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: iroquois homeobox protein 3b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000042271 irx3b-001 ENSDARG00000031138 7955 + 25:37487560-37492232 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000042271
Transcript ID Brain Heart Liver Muscle
ENSDART00000042271 0.298±0.00 0.254±0.21 0.027±0.00 0.726±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0039023 IGI pronephric duct morphogenesis
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022095 Irx4-001 protein_coding Mus_musculus 0 207
ENSMUST00000034185 Irx6-001 protein_coding Mus_musculus 0 215
ENSMUST00000167261 Irx6-002 protein_coding Mus_musculus 0 215
ENSMUST00000176684 Irx4-002 protein_coding Mus_musculus 0 207
ENST00000231357 IRX4-001 protein_coding Homo_sapiens 0 230
ENST00000290552 IRX6-001 protein_coding Homo_sapiens 0 222
ENST00000302006 IRX1-001 protein_coding Homo_sapiens 0 235
ENST00000320990 IRX5-002 protein_coding Homo_sapiens 0 200
ENST00000329734 IRX3-001 protein_coding Homo_sapiens 0 276
ENST00000394636 IRX5-001 protein_coding Homo_sapiens 0 200
ENST00000505790 IRX4-004 protein_coding Homo_sapiens 0 230
ENST00000505938 IRX4-006 processed_transcript Homo_sapiens 0 230
ENST00000508261 IRX4-002 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000511126 IRX4-005 protein_coding Homo_sapiens 1e-36 158
ENST00000513692 IRX4-003 protein_coding Homo_sapiens 0 230
ENST00000558180 IRX3-002 retained_intron Homo_sapiens 0 276
ENST00000558315 IRX6-002 processed_transcript Homo_sapiens 0 206
ENST00000558597 IRX5-004 protein_coding Homo_sapiens 0 200
ENST00000613726 IRX4-201 protein_coding Homo_sapiens 0 230
ENST00000622814 IRX4-202 protein_coding Homo_sapiens 0 230

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