C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L10a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000062983 rpl10a-001 ENSDARG00000042905 7955 + 8:24591065-24595928 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000062983
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000062983 135.015±137.61 928.311±657.97 516.154±724.85 657.300±0.00 758.389±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002L9 CIL_0002L9_0001 CGP 8:24584426-24595928

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0015934 IEA large ribosomal subunit
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042334 Rpl10a-001 protein_coding Mus_musculus 0 577
ENSMUST00000071184 Rpl10a-ps2-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000116410 Gm13573-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000120360 Rpl10a-ps1-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000128758 Rpl10a-006 retained_intron Mus_musculus 4e-21 106
ENSMUST00000129935 Rpl10a-002 nonsense_mediated_decay Mus_musculus 5e-21 106
ENSMUST00000143443 Rpl10a-004 retained_intron Mus_musculus 3e-21 106
ENSMUST00000150103 Rpl10a-005 retained_intron Mus_musculus 4e-21 106
ENSMUST00000152665 Rpl10a-003 retained_intron Mus_musculus 2e-26 122

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