C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S4, X-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000128917 rps4x-001 ENSDARG00000014690 7955 - 7:53088995-53094879 protein_coding

Danio rerio EnsemblZv9

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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000128917
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000128917 286.050±17.12 1383.395±283.46 387.768±543.44 898.465±0.00 828.755±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YL CIL_0000YL_0001 CGP 7:53088995-53103912

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0007420 IMP brain development
GO:0009790 IMP embryo development
GO:0019843 IEA rRNA binding
GO:0030529 IEA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033683 Rps4x-001 protein_coding Mus_musculus 0 699
ENST00000316084 RPS4X-001 protein_coding Homo_sapiens 0 732
ENST00000402039 RPS4XP8-001 processed_pseudogene Homo_sapiens 0 477
ENST00000427198 RPS4XP16-001 transcribed_processed_pseudogene Homo_sapiens 0 560
ENST00000482189 RPS4XP1-001 processed_pseudogene Homo_sapiens 0 556
ENST00000505751 RPS4XP20-001 processed_pseudogene Homo_sapiens 0 446
ENST00000595905 RPS4XP16-003 processed_transcript Homo_sapiens 0 460
ENST00000596904 RPS4XP16-002 processed_transcript Homo_sapiens 0 309

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