C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S4, X-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000316084 RPS4X-001 ENSG00000198034 9606 - X:72272042-72277300 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316084
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316084 487.882±0.00 130.741±0.00 54.367±0.00 107.688±23.11 248.881±167.76 402.691±271.14 44.753±7.05 185.131±94.35 109.396±2.13 260.979±147.04 85.879±57.99 617.922±540.41 472.887±367.41 180.759±142.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066A CIL_00066A_0001 CGP X:72181353-72302926
CIL_0006RO CIL_0006RO_0001 CGP X:72204657-72277300
CIL_0000YL CIL_0000YL_0002 CGP X:72255679-72307187

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0003735 IMP:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005840 IDA:IEA ribosome
GO:0005844 IDA polysome
GO:0005925 IDA focal adhesion
GO:0006412 IC:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0007275 IMP multicellular organismal development
GO:0008284 IMP positive regulation of cell proliferation
GO:0010467 TAS gene expression
GO:0015935 IDA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019843 IEA rRNA binding
GO:0022627 NAS cytosolic small ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IMP positive regulation of translation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033683 Rps4x-001 protein_coding Mus_musculus 0 1138
ENSMUST00000119790 Gm13680-001 processed_pseudogene Mus_musculus 0 1026
ENSMUST00000165198 Gm9294-001 processed_pseudogene Mus_musculus 0 998
ENSMUST00000183728 Gm15013-002 protein_coding Mus_musculus 0 987
ENSMUST00000183537 Gm15013-001 translated_processed_pseudogene Mus_musculus 0 987
ENSDART00000128917 rps4x-001 protein_coding Danio_rerio 0 732
ENSMUST00000119478 Gm12852-001 processed_pseudogene Mus_musculus 0 675
ENSMUST00000187360 RP24-279G1.1-001 processed_pseudogene Mus_musculus 0 654
ENSMUST00000121609 Gm12267-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000119465 Gm12757-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000155028 Rps4x-003 retained_intron Mus_musculus 0 532
ENSDART00000007957 rps4x-003 retained_intron Danio_rerio 0 462
ENSMUST00000118165 Gm14020-001 processed_pseudogene Mus_musculus 3e-39 167

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