C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type, 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000130105 psma3-001 ENSDARG00000086618 7955 - 17:11285124-11303227 protein_coding

Danio rerio EnsemblZv9

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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000130105
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000130105 65.134±14.43 79.791±1.49 46.731±44.21 3.602±0.00 66.936±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0004175 IEA endopeptidase activity
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005839 IEA proteasome core complex
GO:0006508 IEA proteolysis
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008233 IEA peptidase activity
GO:0016787 IEA hydrolase activity
GO:0019773 IEA proteasome core complex, alpha-subunit complex
GO:0051603 IEA proteolysis involved in cellular protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071704 Psma3-005 nonsense_mediated_decay Mus_musculus 0 505
ENSMUST00000118459 Gm13835-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000160027 Psma3-001 protein_coding Mus_musculus 0 521
ENSMUST00000160683 Psma3-004 retained_intron Mus_musculus 0 320
ENSMUST00000160864 Psma3-007 protein_coding Mus_musculus 0 416
ENSMUST00000162626 Psma3-002 nonsense_mediated_decay Mus_musculus 0 433
ENSMUST00000163035 Psma3-006 retained_intron Mus_musculus 8e-17 92
ENST00000216455 PSMA3-001 protein_coding Homo_sapiens 0 466
ENST00000412908 PSMA3-002 protein_coding Homo_sapiens 0 396
ENST00000553665 PSMA3-008 retained_intron Homo_sapiens 0 276
ENST00000553677 PSMA3-007 protein_coding Homo_sapiens 0.000000000001 77
ENST00000554812 PSMA3-006 retained_intron Homo_sapiens 0 353
ENST00000555743 PSMA3-016 retained_intron Homo_sapiens 0 375
ENST00000555931 PSMA3-011 nonsense_mediated_decay Homo_sapiens 0 305
ENST00000556321 PSMA3-015 retained_intron Homo_sapiens 0.0000000000001 81
ENST00000557087 PSMA3-012 nonsense_mediated_decay Homo_sapiens 0 265
ENST00000557508 PSMA3-013 protein_coding Homo_sapiens 0 361

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