C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160027 Psma3-001 ENSMUSG00000060073 10090 + 12:70974621-70996347 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryENSMUST00000160027
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENSMUST00000160027 2.874±1.03 2.589±0.41 8.921±3.98 3.178±0.00 2.028±0.48 1.546±0.16 3.110±0.23 3.783±0.44 2.696±0.14 6.595±0.48 2.866±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001K7 CIL_0001K7_0002 CGP 12:70937857-70996347
CIL_0004LX CIL_0004LX_0002 CGP 12:70974621-71098592

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0005839 IDA proteasome core complex
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0019773 IEA proteasome core complex, alpha-subunit complex
GO:0051603 IEA proteolysis involved in cellular protein catabolic process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130105 psma3-001 protein_coding Danio_rerio 0 521
ENST00000216455 PSMA3-001 protein_coding Homo_sapiens 0 1092
ENST00000412908 PSMA3-002 protein_coding Homo_sapiens 0 965
ENST00000424879 RP4-580O19.2-001 processed_pseudogene Homo_sapiens 0 651
ENST00000553665 PSMA3-008 retained_intron Homo_sapiens 0 580
ENST00000553677 PSMA3-007 protein_coding Homo_sapiens 0 272
ENST00000554812 PSMA3-006 retained_intron Homo_sapiens 0 791
ENST00000555743 PSMA3-016 retained_intron Homo_sapiens 0 819
ENST00000555931 PSMA3-011 nonsense_mediated_decay Homo_sapiens 0 697
ENST00000556321 PSMA3-015 retained_intron Homo_sapiens 0 344
ENST00000557087 PSMA3-012 nonsense_mediated_decay Homo_sapiens 0 678
ENST00000557290 PSMA3-004 retained_intron Homo_sapiens 0 272
ENST00000557508 PSMA3-013 protein_coding Homo_sapiens 0 933

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