C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071704 Psma3-005 ENSMUSG00000060073 10090 + 12:70974715-70994475 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071704
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071704 27.279±7.17 52.886±10.29 44.762±1.06 21.684±7.46 43.093±8.40 28.855±7.36 9.349±3.85 27.585±7.82 62.697±9.63 32.115±5.32 37.819±7.37 44.551±17.15 43.929±16.81 27.268±8.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001K7 CIL_0001K7_0002 CGP 12:70937857-70996347
CIL_0004LX CIL_0004LX_0002 CGP 12:70974621-71098592

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004175 IEA endopeptidase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005839 IDA proteasome core complex
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0019773 IEA proteasome core complex, alpha-subunit complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130105 psma3-001 protein_coding Danio_rerio 0 505
ENST00000216455 PSMA3-001 protein_coding Homo_sapiens 0 1057
ENST00000412908 PSMA3-002 protein_coding Homo_sapiens 0 933
ENST00000424879 RP4-580O19.2-001 processed_pseudogene Homo_sapiens 0 647
ENST00000553665 PSMA3-008 retained_intron Homo_sapiens 0 547
ENST00000553677 PSMA3-007 protein_coding Homo_sapiens 0 272
ENST00000554812 PSMA3-006 retained_intron Homo_sapiens 0 809
ENST00000555743 PSMA3-016 retained_intron Homo_sapiens 0 785
ENST00000555931 PSMA3-011 nonsense_mediated_decay Homo_sapiens 0 713
ENST00000556321 PSMA3-015 retained_intron Homo_sapiens 0 363
ENST00000557087 PSMA3-012 nonsense_mediated_decay Homo_sapiens 0 678
ENST00000557290 PSMA3-004 retained_intron Homo_sapiens 0 272
ENST00000557508 PSMA3-013 protein_coding Homo_sapiens 0 926

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