C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000556083 ACTN1-008 ENSG00000072110 9606 - 14:68874318-68888263 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CK CIL_0002CK_0001 CGP 14:68787660-68979440
CIL_0001JZ CIL_0001JZ_0002 CGP 14:68874143-69153150

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021554 Actn1-201 protein_coding Mus_musculus 0 1960
ENSMUST00000167327 Actn1-202 protein_coding Mus_musculus 0 1709
ENSDART00000100217 actn1-201 protein_coding Danio_rerio 0 1160
ENSDART00000133740 actn1-002 nonsense_mediated_decay Danio_rerio 0 1160
ENSDART00000140243 actn1-001 protein_coding Danio_rerio 0 1160
ENSMUST00000144909 Actn4-002 processed_transcript Mus_musculus 0 1051
ENSMUST00000068045 Actn4-001 protein_coding Mus_musculus 0 1051
ENSDART00000123678 actn1-202 protein_coding Danio_rerio 0 1046
ENSDART00000001649 actn3b-001 protein_coding Danio_rerio 0 773
ENSMUST00000168193 Actn2-201 protein_coding Mus_musculus 0 763
ENSMUST00000064204 Actn2-001 protein_coding Mus_musculus 0 763
ENSMUST00000050884 Hmgn1-001 protein_coding Mus_musculus 0 547
ENSDART00000133858 actn1-003 nonsense_mediated_decay Danio_rerio 0 453
ENSDART00000032887 ACTN4 (1 of 3)-201 protein_coding Danio_rerio 0 387
ENSMUST00000143584 Actn4-007 retained_intron Mus_musculus 0 333
ENSMUST00000145713 Hmgn1-003 retained_intron Mus_musculus 0 267

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