C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: actinin, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000556432 ACTN1-023 ENSG00000072110 9606 - 14:68879864-68881122 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CK CIL_0002CK_0001 CGP 14:68787660-68979440
CIL_0001JZ CIL_0001JZ_0002 CGP 14:68874143-69153150

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021554 Actn1-201 protein_coding Mus_musculus 0 477
ENSMUST00000167327 Actn1-202 protein_coding Mus_musculus 0 475
ENSMUST00000144909 Actn4-002 processed_transcript Mus_musculus 0 370
ENSMUST00000068045 Actn4-001 protein_coding Mus_musculus 0 370
ENSDART00000100217 actn1-201 protein_coding Danio_rerio 0 335
ENSDART00000123678 actn1-202 protein_coding Danio_rerio 0 335
ENSDART00000133740 actn1-002 nonsense_mediated_decay Danio_rerio 0 335
ENSDART00000140243 actn1-001 protein_coding Danio_rerio 0 335
ENSMUST00000143584 Actn4-007 retained_intron Mus_musculus 0 333
ENSDART00000001649 actn3b-001 protein_coding Danio_rerio 0 333
ENSMUST00000168193 Actn2-201 protein_coding Mus_musculus 0 326
ENSMUST00000064204 Actn2-001 protein_coding Mus_musculus 0 326
ENSDART00000133858 actn1-003 nonsense_mediated_decay Danio_rerio 0 265

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