C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538545 ACTN1-006 ENSG00000072110 9606 - 14:68874859-68979076 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLungMuscleOvaryENST00000538545
Transcript ID Brain Breast Colon Heart Kidney Lung Muscle Ovary
ENST00000538545 2.336±0.00 17.563±0.00 5.752±0.00 1.887±0.00 1.758±0.00 5.569±0.00 1.659±0.00 6.214±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CK CIL_0002CK_0001 CGP 14:68787660-68979440
CIL_0001JZ CIL_0001JZ_0002 CGP 14:68874143-69153150

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002576 TAS platelet degranulation
GO:0003725 IDA double-stranded RNA binding
GO:0005178 IDA integrin binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005576 TAS extracellular region
GO:0005615 IDA extracellular space
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005925 IMP focal adhesion
GO:0007596 TAS blood coagulation
GO:0017166 IPI vinculin binding
GO:0030168 TAS platelet activation
GO:0030198 TAS extracellular matrix organization
GO:0031093 TAS platelet alpha granule lumen
GO:0031143 TAS pseudopodium
GO:0034329 TAS cell junction assembly
GO:0042981 NAS regulation of apoptotic process
GO:0042995 IDA cell projection
GO:0044325 IPI ion channel binding
GO:0048041 IMP focal adhesion assembly
GO:0051271 IMP negative regulation of cellular component movement
GO:0051764 IEA actin crosslink formation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167327 Actn1-202 protein_coding Mus_musculus 0 3485
ENSMUST00000021554 Actn1-201 protein_coding Mus_musculus 0 3347
ENSDART00000123678 actn1-202 protein_coding Danio_rerio 0 2128
ENSMUST00000068045 Actn4-001 protein_coding Mus_musculus 0 2087
ENSDART00000100217 actn1-201 protein_coding Danio_rerio 0 2002
ENSDART00000133740 actn1-002 nonsense_mediated_decay Danio_rerio 0 2002
ENSDART00000140243 actn1-001 protein_coding Danio_rerio 0 2002
ENSMUST00000168193 Actn2-201 protein_coding Mus_musculus 0 1796
ENSMUST00000064204 Actn2-001 protein_coding Mus_musculus 0 1796
ENSDART00000001649 actn3b-001 protein_coding Danio_rerio 0 1749
ENSDART00000005682 actn3a-001 protein_coding Danio_rerio 0 1618
ENSMUST00000006626 Actn3-001 protein_coding Mus_musculus 0 1531
ENSMUST00000127210 Actn4-005 protein_coding Mus_musculus 0 1421
ENSMUST00000144909 Actn4-002 processed_transcript Mus_musculus 0 1410
ENSDART00000032887 ACTN4 (1 of 3)-201 protein_coding Danio_rerio 0 791
ENSMUST00000150493 Actn4-006 processed_transcript Mus_musculus 0 632
ENSDART00000133858 actn1-003 nonsense_mediated_decay Danio_rerio 0 466
ENSMUST00000143584 Actn4-007 retained_intron Mus_musculus 0 333

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