C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actinin, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000544964 ACTN1-019 ENSG00000072110 9606 - 14:68879046-68890142 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CK CIL_0002CK_0001 CGP 14:68787660-68979440
CIL_0001JZ CIL_0001JZ_0002 CGP 14:68874143-69153150

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0051015 IEA actin filament binding
GO:0051017 IEA actin filament bundle assembly
GO:0051764 IEA actin crosslink formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167327 Actn1-202 protein_coding Mus_musculus 0 785
ENSMUST00000021554 Actn1-201 protein_coding Mus_musculus 0 785
ENSMUST00000144909 Actn4-002 processed_transcript Mus_musculus 0 442
ENSMUST00000068045 Actn4-001 protein_coding Mus_musculus 0 442
ENSDART00000032887 ACTN4 (1 of 3)-201 protein_coding Danio_rerio 0 392
ENSDART00000001649 actn3b-001 protein_coding Danio_rerio 0 326
ENSMUST00000143584 Actn4-007 retained_intron Mus_musculus 0 316
ENSDART00000100217 actn1-201 protein_coding Danio_rerio 0 311
ENSDART00000133740 actn1-002 nonsense_mediated_decay Danio_rerio 0 311
ENSDART00000140243 actn1-001 protein_coding Danio_rerio 0 311
ENSMUST00000168193 Actn2-201 protein_coding Mus_musculus 0 296
ENSMUST00000064204 Actn2-001 protein_coding Mus_musculus 0 296
ENSDART00000123678 actn1-202 protein_coding Danio_rerio 0 294
ENSDART00000133858 actn1-003 nonsense_mediated_decay Danio_rerio 0 265

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