C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | collagen, type I, alpha 2 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000464916  |
COL1A2-003 |
ENSG00000164692 |
9606 | + |
7:94427312-94430367  |
retained_intron |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0006DY | CIL_0006DY_0001 | CGP | 7:93962762-94431232 |
| CIL_00082O | CIL_00082O_0001 | VISTA | 7:94046650-94649568 |
| CIL_0007XR | CIL_0007XR_0001 | VISTA | 7:94067785-94669696 |
| CIL_00095G | CIL_00095G_0001 | VISTA | 7:94074791-94676705 |
| CIL_0008ZR | CIL_0008ZR_0001 | VISTA | 7:94144032-94745602 |
| CIL_0004SO | CIL_0004SO_0002 | CGP | 7:94394561-94557019 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000031668
|
Col1a2-001 | protein_coding | Mus_musculus | 0 | 1005 |
|
ENSDART00000042990
|
col1a2-201 | protein_coding | Danio_rerio | 0 | 403 |
|
ENSDART00000144544
|
col1a2-001 | protein_coding | Danio_rerio | 0 | 403 |
|
ENSDART00000047010
|
col1a1a-201 | protein_coding | Danio_rerio | 1e-31 | 141 |
|
ENSDART00000009393
|
col1a1a-001 | protein_coding | Danio_rerio | 2e-30 | 137 |
|
ENSDART00000140586
|
col1a1a-002 | processed_transcript | Danio_rerio | 7e-30 | 135 |
|
ENSDART00000015092
|
col1a1b-001 | protein_coding | Danio_rerio | 9e-29 | 132 |
|
ENSMUST00000026740
|
Col7a1-201 | protein_coding | Mus_musculus | 0.000006 | 57 |
|
ENSMUST00000126780
|
Col7a1-002 | retained_intron | Mus_musculus | 0.000006 | 57 |
|
ENSMUST00000112070
|
Col7a1-001 | protein_coding | Mus_musculus | 0.000006 | 57 |
