C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type I, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000481570 COL1A2-002 ENSG00000164692 9606 + 7:94422471-94430688 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DY CIL_0006DY_0001 CGP 7:93962762-94431232
CIL_00082O CIL_00082O_0001 VISTA 7:94046650-94649568
CIL_0007XR CIL_0007XR_0001 VISTA 7:94067785-94669696
CIL_00095G CIL_00095G_0001 VISTA 7:94074791-94676705
CIL_0008ZR CIL_0008ZR_0001 VISTA 7:94144032-94745602
CIL_0004SO CIL_0004SO_0002 CGP 7:94394561-94557019

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031668 Col1a2-001 protein_coding Mus_musculus 0 835
ENSMUST00000155687 Col1a2-006 retained_intron Mus_musculus 0 505
ENSDART00000042990 col1a2-201 protein_coding Danio_rerio 0 339
ENSDART00000144544 col1a2-001 protein_coding Danio_rerio 0 339
ENSDART00000047010 col1a1a-201 protein_coding Danio_rerio 8e-26 124
ENSDART00000009393 col1a1a-001 protein_coding Danio_rerio 1e-24 121
ENSDART00000140586 col1a1a-002 processed_transcript Danio_rerio 4e-24 119
ENSDART00000015092 col1a1b-001 protein_coding Danio_rerio 1e-23 117
ENSMUST00000026740 Col7a1-201 protein_coding Mus_musculus 0.00003 57
ENSMUST00000126780 Col7a1-002 retained_intron Mus_musculus 0.00003 57
ENSMUST00000112070 Col7a1-001 protein_coding Mus_musculus 0.00003 57

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