C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal antigen 1b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000142864 stag1b-001 ENSDARG00000062137 7955 - 24:27818966-27865418 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000142864
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000142864 6.148±1.03 3.209±1.02 7.409±0.99 0.117±0.00 0.878±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041418 Stag1-004 protein_coding Mus_musculus 0 1533
ENSMUST00000123302 Stag1-008 nonsense_mediated_decay Mus_musculus 0 1125
ENSMUST00000129269 Stag1-001 protein_coding Mus_musculus 0 1639
ENSMUST00000138405 Stag1-005 nonsense_mediated_decay Mus_musculus 0 289
ENSMUST00000149771 Stag1-016 processed_transcript Mus_musculus 0 1059
ENST00000236698 STAG1-002 protein_coding Homo_sapiens 0 1622
ENST00000383202 STAG1-001 protein_coding Homo_sapiens 0 1622
ENST00000434713 STAG1-201 protein_coding Homo_sapiens 0 1371
ENST00000483235 STAG1-003 nonsense_mediated_decay Homo_sapiens 0 1136
ENST00000487065 STAG1-004 nonsense_mediated_decay Homo_sapiens 0 1037

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