C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal antigen 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434713 STAG1-201 ENSG00000118007 9606 - 3:136337157-136752403 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000434713
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000434713 1.976±0.00 3.624±0.00 4.222±0.00 1.389±0.00 2.217±0.00 1.767±0.00 6.592±0.00 1.087±0.00 3.501±0.00 3.918±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000149771 Stag1-016 processed_transcript Mus_musculus 0 5387
ENSMUST00000129269 Stag1-001 protein_coding Mus_musculus 0 4276
ENSMUST00000041418 Stag1-004 protein_coding Mus_musculus 0 4239
ENSMUST00000123302 Stag1-008 nonsense_mediated_decay Mus_musculus 0 2475
ENSMUST00000146934 Stag1-006 protein_coding Mus_musculus 0 1991
ENSMUST00000138405 Stag1-005 nonsense_mediated_decay Mus_musculus 0 1663
ENSMUST00000155108 Stag1-007 nonsense_mediated_decay Mus_musculus 0 1592
ENSDART00000142601 stag1a-001 protein_coding Danio_rerio 0 1426
ENSDART00000088110 stag1a-201 protein_coding Danio_rerio 0 1400
ENSDART00000089376 stag1b-201 protein_coding Danio_rerio 0 1371
ENSDART00000142864 stag1b-001 protein_coding Danio_rerio 0 1371
ENSMUST00000191345 Stag1-017 retained_intron Mus_musculus 0 1260
ENSMUST00000146312 Stag1-002 protein_coding Mus_musculus 0 776
ENSMUST00000143955 Stag1-015 protein_coding Mus_musculus 0 763
ENSMUST00000143816 Stag1-003 retained_intron Mus_musculus 0 763
ENSMUST00000133388 Stag1-011 protein_coding Mus_musculus 0 691
ENSMUST00000144005 Stag1-012 retained_intron Mus_musculus 0 518
ENSMUST00000143150 Stag1-013 retained_intron Mus_musculus 0 340
ENSMUST00000123315 Stag1-010 retained_intron Mus_musculus 0 309
ENSMUST00000124487 Stag1-009 protein_coding Mus_musculus 0 268

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