C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal antigen 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000383202 STAG1-001 ENSG00000118007 9606 - 3:136336233-136752368 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000383202
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000383202 6.657±0.00 5.138±0.00 2.108±0.00 3.191±0.16 6.212±1.17 6.551±2.60 2.965±1.60 3.909±2.29 2.958±0.86 4.444±0.61 4.443±3.76 6.991±3.32 4.289±0.64 5.667±1.49

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000775 TAS chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0003682 IEA chromatin binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 TAS chromosome
GO:0005829 TAS cytosol
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0030054 IDA cell junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129269 Stag1-001 protein_coding Mus_musculus 0 7710
ENSMUST00000041418 Stag1-004 protein_coding Mus_musculus 0 5260
ENSMUST00000123302 Stag1-008 nonsense_mediated_decay Mus_musculus 0 4795
ENSMUST00000146934 Stag1-006 protein_coding Mus_musculus 0 3866
ENSMUST00000149771 Stag1-016 processed_transcript Mus_musculus 0 2905
ENSMUST00000191345 Stag1-017 retained_intron Mus_musculus 0 1977
ENSDART00000142601 stag1a-001 protein_coding Danio_rerio 0 1888
ENSDART00000088110 stag1a-201 protein_coding Danio_rerio 0 1875
ENSMUST00000138405 Stag1-005 nonsense_mediated_decay Mus_musculus 0 1650
ENSDART00000089376 stag1b-201 protein_coding Danio_rerio 0 1622
ENSDART00000142864 stag1b-001 protein_coding Danio_rerio 0 1622
ENSMUST00000155108 Stag1-007 nonsense_mediated_decay Mus_musculus 0 1592
ENSMUST00000143955 Stag1-015 protein_coding Mus_musculus 0 931
ENSMUST00000143816 Stag1-003 retained_intron Mus_musculus 0 721
ENSMUST00000146312 Stag1-002 protein_coding Mus_musculus 0 721
ENSMUST00000133388 Stag1-011 protein_coding Mus_musculus 0 691
ENSMUST00000144005 Stag1-012 retained_intron Mus_musculus 0 499
ENSMUST00000143150 Stag1-013 retained_intron Mus_musculus 0 340
ENSMUST00000123315 Stag1-010 retained_intron Mus_musculus 0 291
ENSMUST00000124487 Stag1-009 protein_coding Mus_musculus 0 268

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