C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trio Rho guanine nucleotide exchange factor a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000144275 trioa-001 ENSDARG00000019426 7955 - 19:43376996-43581185 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyENSDART00000144275
Transcript ID Heart Kidney
ENSDART00000144275 0.269±0.00 0.554±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0004672 IEA protein kinase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006468 IEA protein phosphorylation
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0016740 IEA transferase activity
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090247 Trio-201 protein_coding Mus_musculus 0 4300
ENST00000240874 KALRN-005 protein_coding Homo_sapiens 0 1208
ENST00000344204 TRIO-001 protein_coding Homo_sapiens 0 4161
ENST00000354186 KALRN-004 protein_coding Homo_sapiens 0 1404
ENST00000360013 KALRN-201 protein_coding Homo_sapiens 0 1297
ENST00000393501 KALRN-008 retained_intron Homo_sapiens 0 1223
ENST00000460856 KALRN-013 protein_coding Homo_sapiens 0 1315
ENST00000502490 TRIO-019 retained_intron Homo_sapiens 0 204
ENST00000502816 TRIO-012 retained_intron Homo_sapiens 0 401
ENST00000505971 TRIO-011 retained_intron Homo_sapiens 0 333
ENST00000509967 TRIO-008 protein_coding Homo_sapiens 0 2955
ENST00000512070 TRIO-010 nonsense_mediated_decay Homo_sapiens 0 4161
ENST00000513206 TRIO-002 protein_coding Homo_sapiens 0 4161
ENST00000515144 TRIO-003 retained_intron Homo_sapiens 0 4058
ENST00000515710 TRIO-004 processed_transcript Homo_sapiens 0 372

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