C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trio Rho guanine nucleotide exchange factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000512070 TRIO-010 ENSG00000038382 9606 + 5:14143837-14508676 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000512070
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000512070 3.610±0.00 1.925±0.00 1.162±0.00 4.338±0.79 3.114±1.50 3.563±0.17 1.091±0.03 1.094±0.66 1.993±0.00 2.847±0.00 1.547±0.28 4.882±0.62 2.203±0.09 2.233±1.22

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0006468 IEA protein phosphorylation
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090247 Trio-201 protein_coding Mus_musculus 0 8785
ENSDART00000087055 trioa-201 protein_coding Danio_rerio 0 4161
ENSDART00000144275 trioa-001 protein_coding Danio_rerio 0 4161
ENSMUST00000114961 Kalrn-012 protein_coding Mus_musculus 0 1437
ENSMUST00000076810 Kalrn-011 protein_coding Mus_musculus 0 1437
ENSMUST00000142817 Kalrn-009 protein_coding Mus_musculus 0 1437
ENSMUST00000114949 Kalrn-003 protein_coding Mus_musculus 0 1315
ENSMUST00000114960 Kalrn-001 protein_coding Mus_musculus 0 1315
ENSMUST00000114947 Kalrn-018 protein_coding Mus_musculus 0 1264
ENSMUST00000114954 Kalrn-007 protein_coding Mus_musculus 0 1206
ENSMUST00000114953 Kalrn-005 protein_coding Mus_musculus 0 1206
ENSMUST00000089655 Kalrn-004 protein_coding Mus_musculus 0 1206
ENSMUST00000151491 Kalrn-002 protein_coding Mus_musculus 0 1144
ENSMUST00000137216 Kalrn-006 retained_intron Mus_musculus 0 252

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