C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: B cell CLL/lymphoma 11A (zinc finger protein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000881 Bcl11a-003 ENSMUSG00000000861 10090 + 11:24078056-24173194 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000881
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000881 0.055±0.02 0.261±0.10 0.306±0.07 12.993±1.51 1.433±0.83 0.566±0.18 0.195±0.05 0.122±0.08 2.796±2.12 0.267±0.05 0.354±0.00 1.214±0.43 0.102±0.05 1.595±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PG CIL_0008PG_0002 VISTA 11:23715166-24317101
CIL_0009DA CIL_0009DA_0002 VISTA 11:23762086-24363576
CIL_0008GM CIL_0008GM_0002 VISTA 11:23795054-24396665
CIL_0008WW CIL_0008WW_0002 VISTA 11:24012332-24614280
CIL_000881 CIL_000881_0002 VISTA 11:24029867-24633908
CIL_0007LM CIL_0007LM_0002 UCNEbase 11:24062983-26981636
CIL_0008BH CIL_0008BH_0002 VISTA 11:24070835-24671855

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0010629 IMP negative regulation of gene expression
GO:0016604 IDA nuclear body
GO:0016925 IMP protein sumoylation
GO:0030183 IMP B cell differentiation
GO:0030217 IMP T cell differentiation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000087426 bcl11aa-001 protein_coding Danio_rerio 0 248
ENSDART00000140827 bcl11ab-001 protein_coding Danio_rerio 9e-18 97
ENSDART00000092040 bcl11ab-201 protein_coding Danio_rerio 1e-16 94
ENST00000335712 BCL11A-001 protein_coding Homo_sapiens 0 3997
ENST00000356842 BCL11A-002 protein_coding Homo_sapiens 0 4549
ENST00000358510 BCL11A-006 protein_coding Homo_sapiens 0 2857
ENST00000359629 BCL11A-003 protein_coding Homo_sapiens 0 1411
ENST00000409351 BCL11A-004 processed_transcript Homo_sapiens 0 979
ENST00000477659 BCL11A-008 processed_transcript Homo_sapiens 0 3020
ENST00000479026 BCL11A-013 processed_transcript Homo_sapiens 0 556
ENST00000489183 BCL11A-011 processed_transcript Homo_sapiens 0 355
ENST00000489516 BCL11A-007 processed_transcript Homo_sapiens 0 963
ENST00000492272 BCL11A-010 processed_transcript Homo_sapiens 0 427

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