C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: B-cell CLL/lymphoma 11A (zinc finger protein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358510 BCL11A-006 ENSG00000119866 9606 - 2:60460274-60553431 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000358510
Transcript ID Bladder Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000358510 0.149±0.00 4.179±0.00 0.495±0.00 1.236±0.00 0.829±0.00 0.456±0.00 0.022±0.00 2.567±0.00 0.079±0.01 0.165±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LM CIL_0007LM_0001 UCNEbase 2:57740887-60568309
CIL_0008BH CIL_0008BH_0001 VISTA 2:59914360-60515380
CIL_000881 CIL_000881_0001 VISTA 2:59970922-60574878
CIL_0008WW CIL_0008WW_0001 VISTA 2:59988962-60590957
CIL_0008GM CIL_0008GM_0001 VISTA 2:60234269-60835938
CIL_0009DA CIL_0009DA_0001 VISTA 2:60267677-60869129
CIL_0008PG CIL_0008PG_0001 VISTA 2:60327921-60929753

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0010976 IDA positive regulation of neuron projection development
GO:0010977 IDA negative regulation of neuron projection development
GO:0016925 ISS protein sumoylation
GO:0030517 ISS negative regulation of axon extension
GO:0032463 IC negative regulation of protein homooligomerization
GO:0042803 TAS protein homodimerization activity
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0046982 IPI protein heterodimerization activity
GO:0048671 IMP negative regulation of collateral sprouting
GO:0048672 IMP positive regulation of collateral sprouting
GO:0050773 IMP regulation of dendrite development
GO:2000171 IMP negative regulation of dendrite development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109514 Bcl11a-006 protein_coding Mus_musculus 0 3493
ENSMUST00000000881 Bcl11a-003 protein_coding Mus_musculus 0 2857
ENSMUST00000124148 Bcl11a-004 retained_intron Mus_musculus 0 902
ENSMUST00000109516 Bcl11a-005 protein_coding Mus_musculus 0 896
ENSDART00000087426 bcl11aa-001 protein_coding Danio_rerio 0 547
ENSMUST00000118955 Bcl11a-001 protein_coding Mus_musculus 0 542
ENSMUST00000109891 Bcl11b-003 protein_coding Mus_musculus 0 270
ENSMUST00000109887 Bcl11b-002 protein_coding Mus_musculus 0 270
ENSMUST00000066060 Bcl11b-001 protein_coding Mus_musculus 0 270
ENSMUST00000127494 Bcl11a-002 processed_transcript Mus_musculus 0 265
ENSDART00000097543 BCL11B (2 of 2)-201 protein_coding Danio_rerio 2e-29 135
ENSDART00000140827 bcl11ab-001 protein_coding Danio_rerio 1e-21 110
ENSDART00000092040 bcl11ab-201 protein_coding Danio_rerio 5e-20 104
ENSMUST00000131318 Zfp629-005 protein_coding Mus_musculus 0.000001 60
ENSMUST00000084564 Zfp629-001 protein_coding Mus_musculus 0.000001 60
ENSMUST00000122066 Zfp629-002 protein_coding Mus_musculus 0.000001 60
ENSMUST00000058038 Zfp629-003 protein_coding Mus_musculus 0.000001 60

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