C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U2 small nuclear RNA auxiliary factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000308924 U2AF2-002 ENSG00000063244 9606 + 19:55655065-55674298 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastLungOvaryPlacentaTestisENST00000308924
Transcript ID Adipose Adrenal Brain Breast Lung Ovary Placenta Testis
ENST00000308924 12.619±0.00 23.232±0.00 8.734±0.00 7.833±5.68 1.915±0.00 6.984±5.65 20.711±2.64 14.843±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S5 CIL_0006S5_0001 CGP 19:55641062-55674715
CIL_0003U5 CIL_0003U5_0001 CGP 19:55654146-55709858

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0000974 IDA Prp19 complex
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006397 TAS:IEA mRNA processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016607 IDA nuclear speck
GO:0019899 IPI enzyme binding
GO:0031124 TAS mRNA 3'-end processing
GO:0033120 IDA positive regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0070742 IEA C2H2 zinc finger domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005041 U2af2-201 protein_coding Mus_musculus 0 2215
ENSMUST00000118127 Gm7061-001 processed_pseudogene Mus_musculus 0 1448
ENSMUST00000165399 U2af2-202 protein_coding Mus_musculus 0 1378
ENSDART00000008535 u2af2a-001 protein_coding Danio_rerio 0 776
ENSDART00000124875 u2af2a-201 protein_coding Danio_rerio 0 730

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