C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U2 small nuclear RNA auxiliary factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450554 U2AF2-001 ENSG00000063244 9606 + 19:55654146-55674715 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000450554
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000450554 15.170±0.00 38.944±0.00 3.063±0.00 15.529±9.33 10.765±8.50 17.399±14.93 11.156±10.15 18.484±14.72 12.201±9.25 29.179±28.51 10.847±9.51 43.688±32.74 34.418±0.66 50.754±1.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S5 CIL_0006S5_0001 CGP 19:55641062-55674715
CIL_0003U5 CIL_0003U5_0001 CGP 19:55654146-55709858

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0000974 IDA Prp19 complex
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006397 IEA:TAS mRNA processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016607 IDA nuclear speck
GO:0019899 IPI enzyme binding
GO:0031124 TAS mRNA 3'-end processing
GO:0033120 IDA positive regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005041 U2af2-201 protein_coding Mus_musculus 0 2662
ENSMUST00000118127 Gm7061-001 processed_pseudogene Mus_musculus 0 1498
ENSMUST00000165399 U2af2-202 protein_coding Mus_musculus 0 1434
ENSDART00000008535 u2af2a-001 protein_coding Danio_rerio 0 815
ENSDART00000124875 u2af2a-201 protein_coding Danio_rerio 0 769

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