C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005798 Snx6-201 ENSMUSG00000005656 10090 - 12:54746349-54795703 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005798
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005798 10.710±1.45 5.448±2.94 26.336±2.66 21.621±6.83 7.163±1.04 6.466±1.76 4.695±0.49 20.884±2.65 9.466±6.25 7.721±0.90 6.584±0.75 14.180±12.36 54.621±19.95 3.266±1.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RR CIL_0008RR_0002 VISTA 12:54232609-54834941
CIL_0005RF CIL_0005RF_0003 CGP 12:54670340-54795703
CIL_0005RE CIL_0005RE_0003 CGP 12:54746349-54862877

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005768 IBA endosome
GO:0006886 ISS intracellular protein transport
GO:0030512 IEA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0031410 IEA cytoplasmic vesicle
GO:0031901 ISS early endosome membrane
GO:0034713 IPI type I transforming growth factor beta receptor binding
GO:0035091 IBA phosphatidylinositol binding
GO:0042147 ISS retrograde transport, endosome to Golgi
GO:0042803 IEA protein homodimerization activity
GO:0045892 IEA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148463 snx6-001 protein_coding Danio_rerio 0 828
ENST00000362031 SNX6-002 protein_coding Homo_sapiens 0 1683
ENST00000396526 SNX6-001 protein_coding Homo_sapiens 0 1648
ENST00000555416 SNX6-004 nonsense_mediated_decay Homo_sapiens 0 579
ENST00000555648 SNX6-009 protein_coding Homo_sapiens 0 355
ENST00000556162 SNX6-003 nonsense_mediated_decay Homo_sapiens 0 1105
ENST00000556303 SNX6-007 retained_intron Homo_sapiens 0 579
ENST00000556712 SNX6-008 nonsense_mediated_decay Homo_sapiens 0 569
ENST00000557265 SNX6-005 protein_coding Homo_sapiens 0 741
ENST00000557341 SNX6-006 nonsense_mediated_decay Homo_sapiens 0 228
ENST00000601728 SNX6P1-001 processed_pseudogene Homo_sapiens 0 1317

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