C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosomal protein S18C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000016977 Mrps18c-001 ENSMUSG00000016833 10090 + 5:100798627-100804471 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016977
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016977 7.103±1.00 3.093±1.43 23.579±1.34 22.893±9.20 6.530±0.93 3.253±1.63 10.392±1.62 9.470±4.27 24.073±22.27 5.989±1.62 30.419±2.00 17.192±17.53 34.416±13.40 11.062±3.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000820 CIL_000820_0002 VISTA 5:100731954-101333223
CIL_0006JA CIL_0006JA_0002 CGP 5:100762145-100804471
CIL_0006J9 CIL_0006J9_0002 CGP 5:100798627-100820965

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005739 IDA mitochondrion
GO:0005763 IEA mitochondrial small ribosomal subunit
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295491 MRPS18C-001 protein_coding Homo_sapiens 0 425
ENST00000321945 FAM175A-001 protein_coding Homo_sapiens 5e-27 128
ENST00000475656 FAM175A-002 nonsense_mediated_decay Homo_sapiens 3e-27 128
ENST00000505525 MRPS18C-007 retained_intron Homo_sapiens 4e-28 128
ENST00000505719 MRPS18C-005 protein_coding Homo_sapiens 0 200
ENST00000507019 MRPS18C-003 protein_coding Homo_sapiens 0 285
ENST00000507349 MRPS18C-006 protein_coding Homo_sapiens 0 195
ENST00000509970 MRPS18C-010 protein_coding Homo_sapiens 0 285
ENST00000514581 MRPS18C-004 retained_intron Homo_sapiens 0 289
ENST00000603391 RP11-62H7.3-001 processed_pseudogene Homo_sapiens 9.99967e-42 172

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