C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transformer 2 beta homolog (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000492417 TRA2B-005 ENSG00000136527 9606 - 3:185916744-185929073 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverMuscleOvaryENST00000492417
Transcript ID Brain Colon Heart Kidney Liver Muscle Ovary
ENST00000492417 1.552±0.00 4.026±0.00 1.097±0.00 3.475±0.00 2.176±0.00 1.295±0.00 5.032±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0001 VISTA 3:185444884-186046681
CIL_0003YC CIL_0003YC_0002 CGP 3:185643739-185938136
CIL_0006RI CIL_0006RI_0001 CGP 3:185915906-186110318

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161286 Tra2b-001 protein_coding Mus_musculus 0 2272
ENSMUST00000023564 Tra2b-006 protein_coding Mus_musculus 0 1910
ENSMUST00000162413 Tra2b-003 nonsense_mediated_decay Mus_musculus 0 1751
ENSMUST00000120850 Gm14639-001 processed_pseudogene Mus_musculus 0 1048
ENSMUST00000052888 Gm10254-201 processed_pseudogene Mus_musculus 0 898
ENSMUST00000118304 Gm11957-001 processed_pseudogene Mus_musculus 0 828
ENSMUST00000118107 Gm15667-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000161774 Tra2b-005 retained_intron Mus_musculus 0 512
ENSMUST00000159946 Tra2b-004 processed_transcript Mus_musculus 0 265

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