C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transformer 2 beta homolog (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382191 TRA2B-008 ENSG00000136527 9606 - 3:185917715-185938103 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000382191
Transcript ID Brain Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000382191 13.716±7.77 12.892±0.00 9.231±0.00 34.959±0.00 37.661±0.00 10.195±2.49 106.312±0.00 33.398±0.00 24.799±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0001 VISTA 3:185444884-186046681
CIL_0003YC CIL_0003YC_0002 CGP 3:185643739-185938136
CIL_0006RI CIL_0006RI_0001 CGP 3:185915906-186110318

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0044822 IDA poly(A) RNA binding
GO:0048026 IDA positive regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162413 Tra2b-003 nonsense_mediated_decay Mus_musculus 0 935
ENSMUST00000023564 Tra2b-006 protein_coding Mus_musculus 0 935
ENSMUST00000161286 Tra2b-001 protein_coding Mus_musculus 0 935
ENSMUST00000120850 Gm14639-001 processed_pseudogene Mus_musculus 0 872
ENSMUST00000118304 Gm11957-001 processed_pseudogene Mus_musculus 0 826
ENSMUST00000052888 Gm10254-201 processed_pseudogene Mus_musculus 0 695
ENSMUST00000161774 Tra2b-005 retained_intron Mus_musculus 0 512
ENSMUST00000118107 Gm15667-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000160579 Tra2b-002 retained_intron Mus_musculus 3e-23 113

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